Browse Element(s) Details


OsAffx.22265.1.S1_at

Description gb:NM_187704.1
DB_XREF= gi:34902493
GEN=P0581F09.5
TID=OsAffx.22265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0581F09.5 (P0581F09.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1801010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17970OsAffx.442.1.S1_x_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.30226.2.S1_s_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.30226.2.S1_x_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.442.1.S1_at2/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17980OsAffx.23283.1.S1_at11/111+10055409..10056675hypothetical protein
LOC_Os01g17990OsAffx.22267.2.S1_x_at11/111+10058220..10061880transcription elongation factor, putative
LOC_Os01g17990OsAffx.22267.1.S1_at11/111+10058220..10061880transcription elongation factor, putative
LOC_Os01g18000Os.27639.1.S1_x_at9/111+10068189..10073138transposon protein, putative, unclassified
LOC_Os01g18000OsAffx.8980.1.S1_at6/111+10068189..10073138transposon protein, putative, unclassified
LOC_Os01g18010OsAffx.22265.1.S1_at10/111+10076116..10077094hypothetical protein
LOC_Os01g18020OsAffx.19614.1.A1_at1/111+10077587..10079052hypothetical protein
LOC_Os01g18030NANA1+10085168..10086339hypothetical protein
LOC_Os01g18040Os.1709.1.S1_x_at5/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040Os.31497.2.S1_x_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040OsAffx.19614.1.A1_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18050Os.7126.1.S1_at11/111+10096074..10099799Tubulin beta-4 chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22265.1.S1_at--581--10851Chr01:10076220..10076396 (25 bp)
TTGGAGGCTCCGCTTCTCGCTTCTA
LOC_Os01g18010
OsAffx.22265.1.S1_at--1085--9291Chr01:10076383..10076404 (22 bp)
TCCGCTTCTCGCTTCTAGTGGGCGA
LOC_Os01g18010
OsAffx.22265.1.S1_at--442--4911Chr01:10076383..10076407 (25 bp)
GCTTCTCGCTTCTAGTGGGCGACCC
LOC_Os01g18010
OsAffx.22265.1.S1_at--519--2551Chr01:10076470..10076494 (25 bp)
AACGGCGTGGGTGGGACTCGGCCTG
LOC_Os01g18010
OsAffx.22265.1.S1_at--191--1091Chr01:10076569..10076593 (25 bp)
AGGGCTCGGCCAGCGAGGACGAGCC
LOC_Os01g18010
OsAffx.22265.1.S1_at--220--971Chr01:10076584..10076608 (25 bp)
AGGACGAGCCGCACAGCCGGGACAT
LOC_Os01g18010
OsAffx.22265.1.S1_at--673--8531Chr01:10076631..10076655 (25 bp)
TGGACCTGCAGTCGCCGCTACCGCA
LOC_Os01g18010
OsAffx.22265.1.S1_at--902--8151Chr01:10076739..10076979 (25 bp)
GGAAAGAGAAAGCTGACCCCATCGT
LOC_Os01g18010
OsAffx.22265.1.S1_at--830--2331Chr01:10076741..10076981 (25 bp)
AAAGAGAAAGCTGACCCCATCGTGC
LOC_Os01g18010
OsAffx.22265.1.S1_at--473--1351NONE
AGAGAAAGCTGACCCCATCGTGCTT
NONE
OsAffx.22265.1.S1_at--20--5571Chr01:10076746..10076986 (25 bp)
GAAAGCTGACCCCATCGTGCTTCGT
LOC_Os01g18010
Target Sequence 
TTGGAGGCTCCGCTTCTCGCTTCTAGTGGGCGACCCCCTCCCATGGGCCGACGCCGGCGAGGGCGAGCGACACGGCCGGG
ACGCGGCCGGCGAGGGCGAACGGCGTGGGTGGGACTCGGCCTGCGAGGGCGAGCGGCGTGGCCGGGACTCGGCCGGTGAG
GGTGAGCGGCGCGGCTGGGACTCGGCCGGCGTGGGCGAGGGCTCGGCCAGCGAGGACGAGCCGCACAGCCGGGACATGGC
CAGCGGCGCTCCCGCGCGATGGACCTGCAGTCGCCGCTACCGCAGCGTCCCGGCCGCCAGATCTCCTGTCCACCCGTCGC
ACGCCATGCCAAGAGAGAAGAGAGAGAGACGAGGAAGAGAGAGAGAAGGAAAGAGAAAGCTGACCCCATCGTGCTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis