Browse Element(s) Details


OsAffx.22281.1.S1_at

Description tigr:9631.m01169
TID=OsAffx.22281.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1244011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12370Os.40020.1.S1_a_at11/113+6516688..6520514HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g12380OsAffx.3208.1.S1_at11/113+6520726..6521028hypothetical protein
LOC_Os03g12390Os.16872.1.S1_at11/113+6524266..6525593Protein kinase domain containing protein, expressed
LOC_Os03g12400NANA3+6526482..6526790transposon protein, putative, unclassified
LOC_Os03g12414Os.33798.2.S1_x_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414Os.33798.1.S1_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414OsAffx.4970.1.S1_at1/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein
LOC_Os03g12450Os.7298.3.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.1.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.2.S1_at10/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12460Os.15503.1.A1_at10/113+6566316..6566901expressed protein
LOC_Os03g12460Os.43918.1.S1_at1/113+6566316..6566901expressed protein
LOC_Os03g12470Os.33121.1.S1_at11/113+6568899..6573152WAK-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22281.1.S1_at--507--5871Chr03:6547132..6547156 (25 bp)
GAGCCGCGCGGAGGTTTGCATCTTC
LOC_Os03g12440
OsAffx.22281.1.S1_at--1098--7191Chr03:6547250..6547274 (25 bp)
GTCGTTCTCGCCAGGGACTTGCAGG
LOC_Os03g12440
OsAffx.22281.1.S1_at--1094--5671Chr03:6547265..6547289 (25 bp)
GACTTGCAGGGCCTCAACGTTGACG
LOC_Os03g12440
OsAffx.22281.1.S1_at--616--2551Chr03:6547280..6547303 (24 bp)
AACGTTGACGTGTCCAGGGTACAGA
LOC_Os03g12440
OsAffx.22281.1.S1_at--1077--2431Chr03:6548746..6548770 (25 bp)
AAAAGGGCGTGCACCTGAGGCCCAT
LOC_Os03g12440
OsAffx.22281.1.S1_at--25--5211Chr03:6548783..6549003 (25 bp)
GCAATTCAAGCCTCACGTTGGTGTA
LOC_Os03g12440
OsAffx.22281.1.S1_at--399--4631Chr03:6549042..6549066 (25 bp)
GCGTAGGCATAAGCAGACTCTGGGA
LOC_Os03g12440
OsAffx.22281.1.S1_at--706--8551Chr03:6549074..6549098 (25 bp)
TGGAGTCATCTCCTCAACAGAGCAT
LOC_Os03g12440
OsAffx.22281.1.S1_at--310--2492Chr03:6549089..6549113 (25 bp)
AACAGAGCATCCCACAACCATTTGA
LOC_Os03g12440
OsAffx.22281.1.S1_at--954--1731Chr03:6549105..6549129 (25 bp)
ACCATTTGATGCCTCACCTGTGAGA
LOC_Os03g12440
OsAffx.22281.1.S1_at--594--6651Chr03:6549250..6549274 (25 bp)
GTTGATATCCACTCTTTGAGGAGGC
LOC_Os03g12440
Target Sequence 
GAGCCGCGCGGAGGTTTGCATCTTCTGCCTCCGCTGCCGCCAGGTGCTCTGCCCGCGCTGCAGCCATGACGAGCCCGGCC
ACCGGCTGCTCAAGGTCCGCCGCTACATGTACCGCTCCGTCGTTCTCGCCAGGGACTTGCAGGGCCTCAACGTTGACGTG
TCCAGGGTACAGACATACATTGTCAATGGCCAAAAGGGCGTGCACCTGAGGCCCATGAGGAGGTCCCCGCAATTCAAGCC
TCACGTTGGTGTAGATATATCTCAGGATGATTTCTCAGGACCTGAAGCTGAGCGTAGGCATAAGCAGACTCTGGGAATTG
TGGTGGAGTCATCTCCTCAACAGAGCATCCCACAACCATTTGATGCCTCACCTGTGAGAAATGAAGATGCCACCATGGTT
GAAGCTGAGTGTGGTCAAGTTCAGACGAATGCGACGGAGTCGGAGTCGTCAGCGGTAGGAGATGCAGATGAGGTTATACC
TAAAGTTACTAAGTTCAATGTTGATATCCACTCTTTGAGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis