Browse Element(s) Details


OsAffx.22417.1.S1_at

Description gb:NM_186764.1
DB_XREF= gi:34900613
TID=OsAffx.22417.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0523A04.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1348011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13430Os.27435.1.S1_x_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.27435.1.S1_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46985.1.S1_x_at2/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_at1/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein
LOC_Os07g13510NANA7+7735670..7735963hypothetical protein
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22417.1.S1_at--841--1631Chr07:7722870..7722894 (25 bp)
AGCGAGCATGATACTGACGGATCCA
LOC_Os07g13480
OsAffx.22417.1.S1_at--229--5751Chr07:7722855..7722879 (25 bp)
GACGGATCCACAGACCATAGCACAG
LOC_Os07g13480
OsAffx.22417.1.S1_at--801--6291Chr07:7722831..7722855 (25 bp)
GATGATGAGCATCCTGAACCACAGC
LOC_Os07g13480
OsAffx.22417.1.S1_at--526--3311Chr07:7722812..7722836 (25 bp)
CACAGCCTGTTGTTCATTCTATCAA
LOC_Os07g13480
OsAffx.22417.1.S1_at--1093--5371Chr07:7722682..7722706 (25 bp)
GAAGCAATTTGATAGTCCACTAGCA
LOC_Os07g13480
OsAffx.22417.1.S1_at--535--2451Chr07:7722624..7722648 (25 bp)
AAAATTGCCATAGGTGAGTTTCACA
LOC_Os07g13480
OsAffx.22417.1.S1_at--1030--5591Chr07:7722534..7722558 (25 bp)
GACAATAGTTGCACATGGAGGCTCT
LOC_Os07g13480
OsAffx.22417.1.S1_at--328--8551Chr07:7722519..7722543 (25 bp)
TGGAGGCTCTATGCAACACCGACAG
LOC_Os07g13480
OsAffx.22417.1.S1_at--1066--1031Chr07:7722471..7722495 (25 bp)
AGGTGCATCATTTCGCTGAACATAC
LOC_Os07g13480
OsAffx.22417.1.S1_at--623--8171Chr07:7722427..7722451 (25 bp)
GGAACTTCCAGCCTTATGGACGCAA
LOC_Os07g13480
OsAffx.22417.1.S1_at--241--51Chr07:7722401..7722425 (25 bp)
ATTGTCGATCAGATGTGCCCCTTTT
LOC_Os07g13480
Target Sequence 
AGCGAGCATGATACTGACGGATCCACAGACCATAGCACAGATGATGAGCATCCTGAACCACAGCCTGTTGTTCATTCTAT
CAATTCATTTCCATTTATGCATGCAACAGGCAAAAATCCCATAAAGGCTTTTAGTGATATTTATGTACTAAAGGAAACAA
TTGCAGATGAGAGTTTCTTTGGGCATAAGAAGCAATTTGATAGTCCACTAGCAAGGGGGAAGACTTTTGATTCAAAAGAG
CACCTGAAAATTGCCATAGGTGAGTTTCACATAGAAAAGAATGCTGAAGTGAAGTACAGTACCAGTAGCAAATCCAAAAT
TGTGGCTGAATGCACGGACAATAGTTGCACATGGAGGCTCTATGCAACACCGACAGGAATTGATTGTTTCTTATTTCATA
GGTGCATCATTTCGCTGAACATACAACTGATTGGGAACTACCAGGAACTTCCAGCCTTATGGACGCAACATTGTCGATCA
GATGTGCCCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis