Browse Element(s) Details


OsAffx.22452.1.S1_x_at

Description gb:NM_186557.1
DB_XREF= gi:34900199
GEN=OJ1080_F08.18
TID=OsAffx.22452.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OJ1080_F08.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g098141/11F-box domain containing protein, expressed
LOC_Os05g206201/11expressed protein
LOC_Os06g076791/11
LOC_Os09g304821/11transposon protein, putative, unclassified
LOC_Os01g290501/11hypothetical protein
LOC_Os12g116001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g139601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g046401/11hypothetical protein
LOC_Os11g359901/11
LOC_Os11g362501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g240801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g120101/11retrotransposon protein, putative, unclassified
LOC_Os08g284391/11
LOC_Os04g058201/11retrotransposon protein, putative, unclassified
LOC_Os12g299001/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09750OsAffx.5272.1.S1_at10/117+5190408..5193220hypothetical protein
LOC_Os07g09750Os.24100.1.A1_at1/117+5190408..5193220hypothetical protein
LOC_Os07g09760OsAffx.8923.1.S1_at6/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09760Os.51887.1.S1_x_at1/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09770NANA7+5200617..5205276retrotransposon protein, putative, unclassified
LOC_Os07g09780OsAffx.16179.1.S1_at10/117+5206577..5207660hypothetical protein
LOC_Os07g09790Os.18194.1.S1_at11/117+5209080..5213380hypothetical protein
LOC_Os07g09790OsAffx.28368.1.S1_at10/117+5209080..5213380hypothetical protein
LOC_Os07g09800Os.53087.1.S1_at10/117+5214329..5215314expressed protein
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09830OsAffx.5275.1.S1_s_at11/117+5227156..5229276No apical meristem protein
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein
LOC_Os07g09860OsAffx.5275.1.S1_s_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09860OsAffx.5275.2.S1_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22452.1.S1_x_at--17--7272Chr07:6473967..6473991 (25 bp)
GTCCTTTTTTCCATCTCCTATCTCA
NONE
OsAffx.22452.1.S1_x_at--374--6833Chr08:27626550..27626575 (25 bp)
GTTTCCCCGTCAGATGTGGCGTCAT
NONE
OsAffx.22452.1.S1_x_at--611--1311Chr07:6474012..6474036 (25 bp)
AGATGTGGCGTCATCTCACGCCATT
NONE
OsAffx.22452.1.S1_x_at--428--192Chr07:6474034..6474058 (25 bp)
ATTTCCCTCTTTCTTCCTGCGAACT
NONE
OsAffx.22452.1.S1_x_at--190--10332Chr07:6474043..6474067 (25 bp)
TTTCTTCCTGCGAACTCGGCGGCCA
NONE
OsAffx.22452.1.S1_x_at--680--1931Chr07:6474067..6474091 (25 bp)
ACGGCGAGCGCTCACGGGCTGAGGA
NONE
OsAffx.22452.1.S1_x_at--907--1011Chr07:6474145..6474169 (25 bp)
AGGTCGCAGAGGTGCGGGACCGCGA
NONE
OsAffx.22452.1.S1_x_at--453--3551Chr07:6474175..6474199 (25 bp)
CATCGGCATCCACCGGGAGCTTCGG
NONE
OsAffx.22452.1.S1_x_at--60--7651Chr07:6474189..6474213 (25 bp)
GGGAGCTTCGGCAGCCTCTGCATCC
NONE
OsAffx.22452.1.S1_x_at--192--112Chr07:6474225..6474249 (25 bp)
ATTCGTTCCTCTTCTTCGGCGAGGA
NONE
OsAffx.22452.1.S1_x_at--894--421211Chr12:6280866..6280887 (22 bp)
CCGCTGTCACATCCTGATTTTTGTT
NONE
Target Sequence 
GTCCTTTTTTCCATCTCCTATCTCACGCCGTCTCGTTTCCCCGTCAGATGTGGCGTCATCTCACGCCATTTCCCTCTTTC
TTCCTGCGAACTCGGCGGCCACGGCGAGCGCTCACGGGCTGAGGAGGTCGGAGAGGAAGACGGCGACGCCCGTGGGGGAG
TGGAGGAGGGAGCGGAGGAGGTCGCAGAGGTGCGGGACCGCGAGGCGGCATCGGCATCCACCGGGAGCTTCGGCAGCCTC
TGCATCCGCCGGCCGACCATTCGTTCCTCTTCTTCGGCGAGGAGGCCGACGCCGGCGGCCGCTGTCACATCCTGATTTTT
GTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22452.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis