Browse Element(s) Details


OsAffx.22548.1.S1_at

Description gb:NM_185877.1
DB_XREF= gi:34898839
GEN=OJ1058_A12.18
TID=OsAffx.22548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1058_A12.18 (OJ1058_A12.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g288902/11hypothetical protein
LOC_Os08g279801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g093301/11hypothetical protein
LOC_Os06g326301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28850OsAffx.22711.4.A1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.22927.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.20380.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28860OsAffx.31919.1.S1_at11/1112+17057083..17057523hypothetical protein
LOC_Os12g28870OsAffx.7730.1.S1_at11/1112+17058561..17059340hypothetical protein
LOC_Os12g28880OsAffx.19878.1.S1_at11/1112+17064756..17065274Protease inhibitor/seed storage/LTP family protein
LOC_Os12g28890Os.40360.1.S1_x_at3/1112+17073309..17076628hypothetical protein
LOC_Os12g28890Os.2358.1.S1_at3/1112+17073309..17076628hypothetical protein
LOC_Os12g28890OsAffx.22548.1.S1_at2/1112+17073309..17076628hypothetical protein
LOC_Os12g28890Os.40855.5.S1_x_at2/1112+17073309..17076628hypothetical protein
LOC_Os12g28890Os.45902.1.A1_x_at2/1112+17073309..17076628hypothetical protein
LOC_Os12g28900Os.46012.2.S1_x_at7/1112+17078314..17080756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g28900Os.27088.1.A1_x_at4/1112+17078314..17080756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g28900Os.46012.3.S1_x_at3/1112+17078314..17080756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g28910NANA12+17083524..17084039hypothetical protein
LOC_Os12g28920NANA12+17086205..17092927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28930Os.24831.1.S1_x_at9/1112+17098680..17104161retrotransposon protein, putative, unclassified
LOC_Os12g28930Os.24831.3.S1_x_at6/1112+17098680..17104161retrotransposon protein, putative, unclassified
LOC_Os12g28930Os.24831.4.S1_x_at1/1112+17098680..17104161retrotransposon protein, putative, unclassified
LOC_Os12g28930Os.53142.1.S1_at1/1112+17098680..17104161retrotransposon protein, putative, unclassified
LOC_Os12g28930Os.24831.3.S1_s_at1/1112+17098680..17104161retrotransposon protein, putative, unclassified
LOC_Os12g28930Os.55127.1.S1_at1/1112+17098680..17104161retrotransposon protein, putative, unclassified
LOC_Os12g28930Os.23706.1.A1_x_at1/1112+17098680..17104161retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22548.1.S1_at--617--7295Chr11:14184093..14184117 (25 bp)
GTGCGTCGAGTTTCTATCGACAAGT
NONE
OsAffx.22548.1.S1_at--963--93555Chr12:27197897..27197965 (25 bp)
TCGACAAGTGCGATGGAATCAACTT
NONE
OsAffx.22548.1.S1_at--1025--8491Chr07:21096813..21096837 (25 bp)
TGGAATCAACTTTATCGGTCGCCGG
NONE
OsAffx.22548.1.S1_at--26--3271Chr07:21096819..21096843 (25 bp)
CAACTTTATCGGTCGCCGGCTTCGT
NONE
OsAffx.22548.1.S1_at--186--10256Chr11:27853660..27853687 (25 bp)
TTTGGGAGTTTTCGCTTCCTCGTCG
NONE
OsAffx.22548.1.S1_at--25--5611Chr07:21096877..21096901 (25 bp)
GACAATTTCGACAAGCTCTTACTCT
NONE
OsAffx.22548.1.S1_at--1033--1571Chr07:21096890..21096914 (25 bp)
AGCTCTTACTCTTTGACTCGGATTC
NONE
OsAffx.22548.1.S1_at--736--7931Chr07:21096909..21096933 (25 bp)
GGATTCAAACCAGTCAAGACAGTTT
NONE
OsAffx.22548.1.S1_at--377--2751Chr07:21096924..21096948 (25 bp)
AAGACAGTTTCAATCTACTATGGCT
NONE
OsAffx.22548.1.S1_at--493--10334Chr11:13288761..13288784 (24 bp)
TTTCAATCTACTATGGCTGCCACCA
NONE
OsAffx.22548.1.S1_at--385--7111Chr07:21096967..21096991 (25 bp)
GTCTTCCCCAGGATCTTCTTGGACT
NONE
Target Sequence 
GTGCGTCGAGTTTCTATCGACAAGTGCGATGGAATCAACTTTATCGGTCGCCGGCTTCGTCTTCGTTTTGGGAGTTTTCG
CTTCCTCGTCGTCGACAATTTCGACAAGCTCTTACTCTTTGACTCGGATTCAAACCAGTCAAGACAGTTTCAATCTACTA
TGGCTGCCACCACCTTCACTTCCGTCTTCCCCAGGATCTTCTTGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis