Browse Element(s) Details


OsAffx.22569.1.S1_x_at

Description gb:NM_185699.1
DB_XREF= gi:34898483
TID=OsAffx.22569.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to Prunus armeniaca ethylene-forming-enzyme-like dioxygenase. (U97530) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g079147/11oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g080147/11oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g079411/11iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os11g349501/11expressed protein
LOC_Os06g080411/11iron/ascorbate-dependent oxidoreductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07860Os.3545.1.S1_at11/116+3822022..3826345Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07869OsAffx.27501.1.S1_at9/116+3827205..3828962hypothetical protein
LOC_Os06g07878Os.4216.1.S1_at11/116+3831013..3832095Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878Os.4216.1.S1_a_at11/116+3831013..3832095Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878Os.4216.2.S1_x_at6/116+3831013..3832095Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07887OsAffx.27499.3.S1_x_at11/116+3833300..3835514Exostosin family protein
LOC_Os06g07887OsAffx.13617.1.S1_x_at2/116+3833300..3835514Exostosin family protein
LOC_Os06g07887Os.51833.1.S1_x_at1/116+3833300..3835514Exostosin family protein
LOC_Os06g07896OsAffx.27499.2.S1_at11/116+3836429..3839148ribosomal protein S15 containing protein
LOC_Os06g07905Os.4754.1.S1_at11/116+3839733..3843897galactosyltransferase family protein, putative, expressed
LOC_Os06g07914OsAffx.22569.2.S1_at11/116+3845137..3846812oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914OsAffx.22569.2.S1_x_at11/116+3845137..3846812oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914OsAffx.22569.1.S1_x_at7/116+3845137..3846812oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07923Os.27542.1.A1_at11/116+3851140..3853472expressed protein
LOC_Os06g07923Os.20904.1.S1_at8/116+3851140..3853472expressed protein
LOC_Os06g07923OsAffx.19206.1.S1_x_at2/116+3851140..3853472expressed protein
LOC_Os06g07932Os.15663.1.S1_at5/116+3853649..3856371oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07932Os.10521.1.S1_at2/116+3853649..3856371oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07941Os.27693.1.S1_at11/116+3857435..3859726iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07941OsAffx.22569.1.S1_x_at1/116+3857435..3859726iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07960Os.3545.1.S1_at11/116+3860286..3864403Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07969Os.3546.1.S1_at11/116+3865261..3867200expressed protein
LOC_Os06g07969OsAffx.27501.1.S1_at9/116+3865261..3867200expressed protein
LOC_Os06g07978Os.4216.1.S1_a_at11/116+3869165..3869917Proteasome subunit alpha type 4, putative
LOC_Os06g07978Os.4216.2.S1_x_at6/116+3869165..3869917Proteasome subunit alpha type 4, putative
LOC_Os06g07978Os.4216.1.S1_at1/116+3869165..3869917Proteasome subunit alpha type 4, putative
LOC_Os06g07987OsAffx.27499.3.S1_x_at11/116+3871356..3873570Exostosin family protein
LOC_Os06g07987OsAffx.13617.1.S1_x_at2/116+3871356..3873570Exostosin family protein
LOC_Os06g07987Os.51833.1.S1_x_at1/116+3871356..3873570Exostosin family protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009813biological_processflavonoid biosynthesis
GO:0016491molecular_functionoxidoreductase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22569.1.S1_x_at--491--3812Chr06:3883751..3883775 (25 bp)
CTCCTCGAGGAGTACACGCGGCGGA
LOC_Os06g08014
OsAffx.22569.1.S1_x_at--731--2892Chr06:3883862..3883886 (25 bp)
AAGGTGACGACGTACGCGCGGTTCA
LOC_Os06g08014
OsAffx.22569.1.S1_x_at--705--4472Chr06:3883909..3883933 (25 bp)
GCCGGAGCTCGTGTACGGCCTCAAG
LOC_Os06g08014
OsAffx.22569.1.S1_x_at--96--2932Chr06:3884003..3884027 (25 bp)
AAGGACGGCCGCTGGCTCGACATTC
LOC_Os06g08014
OsAffx.22569.1.S1_x_at--384--5672Chr06:3884021..3884045 (25 bp)
GACATTCCGGTGCTCACCAACGAGC
LOC_Os06g08014
OsAffx.22569.1.S1_x_at--828--994Chr06:3884773..3884797 (25 bp)
AGGATGTCGGTGGTGATGTTCTACC
LOC_Os06g08014
OsAffx.22569.1.S1_x_at--1015--8832Chr06:3884786..3884810 (25 bp)
TGATGTTCTACCAGCCGGAGCCGCA
LOC_Os06g08014
OsAffx.22569.1.S1_x_at--943--2952Chr06:3884875..3884899 (25 bp)
AAGGCCAAGGCCTTCGGCGACGGCT
NONE
OsAffx.22569.1.S1_x_at--329--5752Chr06:3884893..3884917 (25 bp)
GACGGCTTCTGGGACGCATTCGCCG
NONE
OsAffx.22569.1.S1_x_at--777--3533Chr06:3884931..3884955 (25 bp)
CATCGACTTCCTCAAGGTCAAGGTC
NONE
OsAffx.22569.1.S1_x_at--249--7832Chr06:3884946..3884970 (25 bp)
GGTCAAGGTCGAGCACCAGCAGCAG
NONE
Target Sequence 
CTCCTCGAGGAGTACACGCGGCGGAGCGAGCAGGTGTTCCGGCGGGTGCTCGCCGCCACGGCGAGGTCGCTGGGGTTCGG
GGAGGAGTTCTTCGGCGACAAGGTCGGCGAGAAGGTGACGACGTACGCGCGGTTCACCTACTACCCGCCATGCCCGCGGC
CGGAGCTCGTGTACGGCCTCAAGCCCCACACGGACAACTCCGTCCTCACCGTCCTCCTCCTCGACAAGCACGTCGGCGGC
CTCCAGCTGCTCAAGGACGGCCGCTGGCTCGACATTCCGGTGCTCACCAACGAGCTCCTCGTCGTCGCCGGCGACGAGAT
TGAGGTAATAGTTATAAAAAGTTGGGTGGTGACGAGCGAGAGGGAGAGGATGTCGGTGGTGATGTTCTACCAGCCGGAGC
CGCACAAGGAGCTGGCGCCGTCGGAGGAGCTCAAGCTCAAGGCCAAGGCCTTCGGCGACGGCTTCTGGGACGCATTCGCC
GCCGGCGAGCGCACCATCGACTTCCTCAAGGTCAAGGTCGAGCACCAGCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22569.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis