Browse Element(s) Details


OsAffx.22673.2.S1_x_at

Description gb:NM_184879.1
DB_XREF= gi:34896847
TID=OsAffx.22673.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0003G23.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4768611/11TPR Domain containing protein
LOC_Os03g477021/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47640Os.50633.1.S1_at10/113+26927777..26935249hypothetical protein
LOC_Os03g47640Os.45041.1.S1_x_at5/113+26927777..26935249hypothetical protein
LOC_Os03g47650OsAffx.22672.1.S1_at10/113+26937495..26944710TPR Domain containing protein, expressed
LOC_Os03g47670OsAffx.10442.1.S1_s_at10/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.1.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.2.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.1626.1.S1_at2/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_x_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.1.S1_at9/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.2557.1.S1_x_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.10442.1.S1_s_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47702OsAffx.1626.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.28851.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.2.S1_at4/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.1.S1_s_at2/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.20341.2.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22674.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.24556.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22673.2.S1_x_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.9154.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47720OsAffx.22674.1.S1_at11/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_x_at2/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_at1/113+26993285..26999248TPR Domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22673.2.S1_x_at--281--2591Chr03:26960184..26960208 (25 bp)
AACGTCCGCCGCCTGAAGAGTGAGT
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--398--4471Chr03:26960194..26960218 (25 bp)
GCCTGAAGAGTGAGTGCTCCTCCCT
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--1143--6971Chr03:26961501..26961525 (25 bp)
GTACCTTGTGGAGGAGCTTGGCTTT
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--120--4891Chr03:26961521..26961545 (25 bp)
GCTTTGACGTCAATGCTGGTTGCCT
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--104--8571Chr03:26961537..26961557 (21 bp)
TGGTTGCCTCTGTGGTGGTGCTACA
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--419--9871Chr03:26962672..26962696 (25 bp)
TACAGCTTTGGGTTGTGCCGCATTA
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--731--7291Chr03:26962686..26962710 (25 bp)
GTGCCGCATTATTTGGAGAAGTTGA
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--647--3891Chr03:26962713..26962737 (25 bp)
CTGTGAGATATCTTCTTGACTGTGG
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--378--6311Chr03:26962757..26962781 (25 bp)
GATGAGACAGGCCATGTTGCTCTTC
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--114--891Chr03:26962765..26962789 (25 bp)
AGGCCATGTTGCTCTTCATTGTGCT
LOC_Os03g47686
OsAffx.22673.2.S1_x_at--455--5532Chr03:26962792..26962816 (25 bp)
GAAAAATGGTCTTTCTCTTCATGCC
LOC_Os03g47686
Target Sequence 
AACGTCCGCCGCCTGAAGAGTGAGTGCTCCTCCCTCCTCGTCTCACCGCCCTCCGACGCCGCGGCGGCAAACCTGGGAAA
AATTGAGGTCATCAGGTACCTTGTGGAGGAGCTTGGCTTTGACGTCAATGCTGGTTGCCTCTGTGGTGGTGCTACAGCTT
TGGGTTGTGCCGCATTATTTGGAGAAGTTGATACTGTGAGATATCTTCTTGACTGTGGGGCTGATCCTAATAAGATAGAT
GAGACAGGCCATGTTGCTCTTCATTGTGCTGTGAAAAATGGTCTTTCTCTTCATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22673.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis