Browse Element(s) Details


OsAffx.2276.1.S1_at

Description tigr:9629.m04715
TID=OsAffx.2276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g488749/11condensation domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein
LOC_Os01g48840OsAffx.11523.1.S1_at11/111+28354377..28355274hypothetical protein
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2276.1.S1_at--406--10591NONE
TTCTGCAGCATCCAGGGAGACTGCA
NONE
OsAffx.2276.1.S1_at--33--4991NONE
GCATCCAGGGAGACTGCATGCGTAT
NONE
OsAffx.2276.1.S1_at--505--3471Chr01:28377535..28377558 (24 bp)
CAGGGAGACTGCATGCGTATGGTAC
LOC_Os01g48874
OsAffx.2276.1.S1_at--380--4991Chr01:28377525..28377549 (25 bp)
GCATGCGTATGGTACGCAGCGTACA
LOC_Os01g48874
OsAffx.2276.1.S1_at--416--6991Chr01:28377514..28377538 (25 bp)
GTACGCAGCGTACACTATTATCCTC
LOC_Os01g48874
OsAffx.2276.1.S1_at--294--5071Chr01:28377510..28377534 (25 bp)
GCAGCGTACACTATTATCCTCTGGA
LOC_Os01g48874
OsAffx.2276.1.S1_at--358--4631Chr01:28377507..28377531 (25 bp)
GCGTACACTATTATCCTCTGGACGA
LOC_Os01g48874
OsAffx.2276.1.S1_at--735--7031Chr01:28377505..28377529 (25 bp)
GTACACTATTATCCTCTGGACGAAG
LOC_Os01g48874
OsAffx.2276.1.S1_at--734--10431Chr01:28377497..28377521 (25 bp)
TTATCCTCTGGACGAAGAATATCTC
LOC_Os01g48874
OsAffx.2276.1.S1_at--61--5791Chr01:28377487..28377511 (25 bp)
GACGAAGAATATCTCCACGGGAAGC
LOC_Os01g48874
OsAffx.2276.1.S1_at--381--2711Chr01:28377483..28377507 (25 bp)
AAGAATATCTCCACGGGAAGCATAA
LOC_Os01g48874
Target Sequence 
TTCTGCAGCATCCAGGGAGACTGCATGCGTATGGTACGCAGCGTACACTATTATCCTCTGGACGAAGAATATCTCCACGG
GAAGCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis