Browse Element(s) Details


OsAffx.22760.2.S1_s_at

Description tigr:9629.m00648
TID=OsAffx.22760.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0716011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein
LOC_Os01g07190OsAffx.29435.1.S1_at9/111+3392564..3393112hypothetical protein
LOC_Os01g07200Os.32568.1.S1_at11/111+3394159..3397306nuclease, putative, expressed
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22760.2.S1_s_at--658--4431Chr01:3378078..3378102 (25 bp)
GCCTTTCTCAATGGTCGACCTCGTT
LOC_Os01g07160
OsAffx.22760.2.S1_s_at--1092--6691Chr01:3378056..3378080 (25 bp)
GTTCCGGTCCACTTGAACGGAGTCA
LOC_Os01g07160
OsAffx.22760.2.S1_s_at--870--5531Chr01:3378031..3378055 (25 bp)
GAAACTACCGTCTGTTGCGAGCCAA
LOC_Os01g07160
OsAffx.22760.2.S1_s_at--93--10792Chr06:16250075..16250100 (25 bp)
TTGGGAAAACGCTCGCGGAGCTCGA
NONE
OsAffx.22760.2.S1_s_at--446--1951Chr01:3377941..3377965 (25 bp)
ACGGCCGCCTGTGCATGGTACGCGA
LOC_Os01g07160
OsAffx.22760.2.S1_s_at--629--5851Chr01:3377900..3377924 (25 bp)
GACCACGACGTGCTGTTGGAGATAT
LOC_Os01g07160
OsAffx.22760.2.S1_s_at--948--3831Chr01:3377870..3377894 (25 bp)
CTGCAGGACTACGACACCGGGAGCT
LOC_Os01g07160
OsAffx.22760.2.S1_s_at--502--2171Chr01:3377857..3377881 (25 bp)
ACACCGGGAGCTGGTCGCTGGACTA
LOC_Os01g07160
OsAffx.22760.2.S1_s_at--918--2771Chr01:3377726..3377750 (25 bp)
AAGAGGAAGCTTCTTGTCGCGACCA
LOC_Os01g07160
OsAffx.22760.2.S1_s_at--439--1871Chr01:3377695..3377719 (25 bp)
ACGAGGCTCATGTCTACGACCCGGA
LOC_Os01g07160
OsAffx.22760.2.S1_s_at--851--3091Chr01:3377610..3377634 (25 bp)
AATACGTCTCTTGCTGTACCAGGAG
LOC_Os01g07160
Target Sequence 
GCCTTTCTCAATGGTCGACCTCGTTCCGGTCCACTTGAACGGAGTCAGAAACTACCGTCTGTTGCGAGCCAAAGGCATAA
GGTCCGGGAGCGGCGAGGAAGTGGCCATGCCGGTTGGGAAAACGCTCGCGGAGCTCGACGGCCGCCTGTGCATGGTACGC
GACGTCCGCCACCGCAGCGACCACGACGTGCTGTTGGAGATATGGAAGCTGCAGGACTACGACACCGGGAGCTGGTCGCT
GGACTACCGCGTCGACCTGCCAGCGCCGGGCCAGCGCCAGCGCCAGCTGCTCACGGCACCGTGGCTCGTCGTCCCGCTCA
CCTACCTTGGTGGCTCCCCGCCGGGAGACAAGAAGAGGAAGCTTCTTGTCGCGACCACGGCGCACGAGGCTCATGTCTAC
GACCCGGACTCCGGCACTCTCCGGACGGTGGCCTCCATTGACAGCTCGGGGGACGGGGACGACGATTCAATACGTCTCTT
GCTGTACCAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22760.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis