Browse Element(s) Details


OsAffx.23090.4.S1_x_at

Description gb:NM_184092.1
DB_XREF= gi:34895277
GEN=P0463F06.31
TID=OsAffx.23090.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative receptor kinase (P0463F06.31), mRNA.
PROD=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0269011/11rust resistance kinase Lr10, putative
LOC_Os01g024607/11receptor kinase LRK14, putative
LOC_Os01g024204/11LRK14, putative
LOC_Os01g023603/11LRK33, putative, expressed
LOC_Os01g028102/11receptor kinase LRK14, putative
LOC_Os01g027502/11receptor kinase LRK14, putative
LOC_Os01g024401/11Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g027901/11receptor kinase LRK14, putative, expressed
LOC_Os01g028401/11LRK14, putative
LOC_Os01g027701/11YRK1, putative, expressed
LOC_Os01g022901/11Ser/Thr receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02650NANA1+888897..895052retrotransposon protein, putative, unclassified
LOC_Os01g02660NANA1+895668..898960retrotransposon protein, putative, unclassified
LOC_Os01g02670Os.46785.2.S1_x_at4/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.6133.1.S1_at2/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.30226.2.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.442.1.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02680Os.33796.1.S1_x_at10/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680OsAffx.26617.2.S1_x_at4/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680Os.45516.2.S1_x_at2/111+908537..911048TAK33, putative, expressed
LOC_Os01g02690OsAffx.23090.4.S1_x_at11/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.1.S1_x_at2/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.2.S1_x_at1/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02700Os.778.2.S1_x_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02700Os.778.1.S1_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02710OsAffx.1916.1.S1_s_at11/111+921253..921977LRk-type protein, putative
LOC_Os01g02720Os.780.1.S1_a_at11/111+926686..931260Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os01g02730OsAffx.23091.2.S1_x_at11/111+932376..935169TAK14, putative, expressed
LOC_Os01g02730Os.1977.3.S1_x_at1/111+932376..935169TAK14, putative, expressed
LOC_Os01g02740NANA1+936807..949253retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23090.4.S1_x_at--700--8310Chr01:733324..733348 (25 bp)
AGGCATTGCCCGAGGAATGGAGTAC
NONE
OsAffx.23090.4.S1_x_at--807--6974Chr01:915921..915945 (25 bp)
GTACCTGCATCAAGGATGCAACCAG
LOC_Os01g02690
OsAffx.23090.4.S1_x_at--783--4454Chr01:915969..915993 (25 bp)
GCCTCATAATATCTTGCTGGACTAT
LOC_Os01g02690
OsAffx.23090.4.S1_x_at--236--1715Chr01:916046..916070 (25 bp)
ACCAAAGCATTGTTACCTTGACCAA
LOC_Os01g02690
OsAffx.23090.4.S1_x_at--381--6754Chr01:916057..916081 (25 bp)
GTTACCTTGACCAAAGCAAGAGGCA
LOC_Os01g02690
OsAffx.23090.4.S1_x_at--523--7655Chr01:733548..733572 (25 bp)
GGGAGATATCTTACAAGTCAGATGT
NONE
OsAffx.23090.4.S1_x_at--668--2011Chr01:916196..916220 (25 bp)
ACTCAGACCCGAGTATTCAGAACCA
LOC_Os01g02690
OsAffx.23090.4.S1_x_at--108--7891Chr01:916317..916341 (25 bp)
GGTTAGACAGATGGCCCTAGTGGCA
LOC_Os01g02690
OsAffx.23090.4.S1_x_at--39--4551Chr01:916330..916354 (25 bp)
GCCCTAGTGGCATTGTGGTGCATTC
LOC_Os01g02690
OsAffx.23090.4.S1_x_at--486--5552Chr01:916367..916391 (25 bp)
GAAACCGTCCCTCGATGACGAAGGT
LOC_Os01g02690
OsAffx.23090.4.S1_x_at--176--5793Chr01:916383..916407 (25 bp)
GACGAAGGTTGTAAACATGCTAACT
LOC_Os01g02690
Target Sequence 
AGGCATTGCCCGAGGAATGGAGTACCTGCATCAAGGATGCAACCAGCGCATCCTCCATTTTGATATCAAGCCTCATAATA
TCTTGCTGGACTATAACTTCAATCCGAAGATTTCAGACTTTGGTCTTGCAAAGCTGTGTGCAAGGGACCAAAGCATTGTT
ACCTTGACCAAAGCAAGAGGCACAATGGGCTACATTGCACCAGAGTTATATTCTAGGAACTTTGGGGAGATATCTTACAA
GTCAGATGTATACAGTTTTGGCATGCTCGTGTTAGAAATGGTTAGTGGAAGGAGGAACTCAGACCCGAGTATTCAGAACC
AAAATGAGGTCTACTTTCCAGAATGGATCTATGAGAAAGTAATTACTGGGCAGGACTTTGTACTTAGTAGGGAAATGACT
GAAGAAGATAGACTGAAGGTTAGACAGATGGCCCTAGTGGCATTGTGGTGCATTCAGTGGAACCCAAGAAACCGTCCCTC
GATGACGAAGGTTGTAAACATGCTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23090.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis