Browse Element(s) Details


OsAffx.2312.1.S1_at

Description gb:NM_191815.1
DB_XREF= gi:34910713
GEN=P0690B02.21
TID=OsAffx.2312.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Myb-related transcription factor-like protein (P0690B02.21), mRNA.
PROD=Myb-related transcription factor-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5241011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52380Os.23709.1.S1_at10/111+30418212..30420020expressed protein
LOC_Os01g52380Os.35895.2.S1_x_at1/111+30418212..30420020expressed protein
LOC_Os01g52390Os.11159.1.S1_at11/111+30422267..30425641retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52400Os.52362.1.S1_at11/111+30429832..30434188acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed
LOC_Os01g52410OsAffx.2312.1.S1_at11/111+30444067..30445393Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g52420OsAffx.2313.1.S1_at11/111+30446858..30447088hypothetical protein
LOC_Os01g52430Os.40626.2.S1_x_at6/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430Os.40626.1.S1_at5/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430OsAffx.23764.1.S1_at1/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52440OsAffx.23764.1.S1_at11/111+30457211..30457732hypothetical protein
LOC_Os01g52450Os.41826.1.S1_x_at10/111+30458236..30462095Hexokinase 2, putative, expressed
LOC_Os01g52460Os.23127.1.S1_s_at11/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52460OsAffx.7779.1.S1_at6/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2312.1.S1_at--387--8391Chr01:30444896..30444920 (25 bp)
GGCGACGATGACAACAACCCAACGA
LOC_Os01g52410
OsAffx.2312.1.S1_at--336--5131Chr01:30445027..30445051 (25 bp)
GCACAAGTCGGAGCAGCTGTACGCC
LOC_Os01g52410
OsAffx.2312.1.S1_at--488--1611Chr01:30445041..30445065 (25 bp)
AGCTGTACGCCGAGCTGATGGGCCT
LOC_Os01g52410
OsAffx.2312.1.S1_at--302--5751Chr01:30445147..30445171 (25 bp)
GACGGGAACGACAAGTCCGACCGCT
LOC_Os01g52410
OsAffx.2312.1.S1_at--802--2851Chr01:30445159..30445183 (25 bp)
AAGTCCGACCGCTAGCAGCAGTACT
LOC_Os01g52410
OsAffx.2312.1.S1_at--790--4851Chr01:30445169..30445193 (25 bp)
GCTAGCAGCAGTACTGACGGCAGCA
LOC_Os01g52410
OsAffx.2312.1.S1_at--250--7531Chr01:30445223..30445247 (25 bp)
GTGGACGTGCACGACAGTACGATGA
LOC_Os01g52410
OsAffx.2312.1.S1_at--1141--4231Chr01:30445253..30445277 (25 bp)
CCGTTGTCGGAGTCCAGCGGCAGCA
LOC_Os01g52410
OsAffx.2312.1.S1_at--628--1511Chr01:30445277..30445301 (25 bp)
AGCAGCGGCTTGTTCTTCGGCTCTC
LOC_Os01g52410
OsAffx.2312.1.S1_at--1054--8311Chr01:30445295..30445319 (25 bp)
GGCTCTCACGCGTTCGGTAGTGGCT
LOC_Os01g52410
OsAffx.2312.1.S1_at--370--7851Chr01:30445310..30445334 (25 bp)
GGTAGTGGCTCGTTCCAAGACCTGC
LOC_Os01g52410
Target Sequence 
GGCGACGATGACAACAACCCAACGACACAAGCCTCCAGCCAACCCGCTCCTCCTACTCCTCCGGCGCCCCTCGTCAACCT
CGACGCGGCCGGCCTCGACGGCGCCGTGGGCGACAACGACGAGCTCCTGCTGCACAAGTCGGAGCAGCTGTACGCCGAGC
TGATGGGCCTCATCGAGCAGCAGCAGTACTCCACGATCACCGCCGCCGCCGTCGACGCGGCGACGACGACGACGTCGTGG
TCGTCGCCGTCGACGGGAACGACAAGTCCGACCGCTAGCAGCAGTACTGACGGCAGCAGCAGCAGCAGCAACCTGCCGTG
GCCGGCCGTGGACGTGCACGACAGTACGATGATGCCGCCGTTGTCGGAGTCCAGCGGCAGCAGCAGCGGCTTGTTCTTCG
GCTCTCACGCGTTCGGTAGTGGCTCGTTCCAAGACCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis