Browse Element(s) Details


OsAffx.23126.1.S1_at

Description tigr:9629.m00503
TID=OsAffx.23126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0578011/11expressed protein
LOC_Os08g303403/11protein tyrosine phosphatase, putative, expressed
LOC_Os01g057101/11Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g057201/11protein tyrosine phosphatase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23126.1.S1_at--650--2931Chr01:2757727..2757751 (25 bp)
AAGGAAGATCAACGCCTCCATTTCA
LOC_Os01g05780
OsAffx.23126.1.S1_at--394--2811Chr01:2757731..2757755 (25 bp)
AAGATCAACGCCTCCATTTCATAAT
LOC_Os01g05780
OsAffx.23126.1.S1_at--1048--652Chr01:2757754..2757778 (25 bp)
ATGAATCTTGTTTAAATGCTCTTTT
LOC_Os01g05780
OsAffx.23126.1.S1_at--361--6831Chr01:2757763..2757787 (25 bp)
GTTTAAATGCTCTTTTCTTTTGCAT
LOC_Os01g05780
OsAffx.23126.1.S1_at--1117--9553Chr08:18544840..18544863 (24 bp)
TCTTTTGCATGAGCAATATCAGGCT
LOC_Os08g30340
OsAffx.23126.1.S1_at--563--6851Chr01:2757886..2757910 (25 bp)
GTTTGCCACAGGTAGTATTTCCATG
LOC_Os01g05780
OsAffx.23126.1.S1_at--270--212Chr08:18544965..18544988 (24 bp)
ATTTCCATGGGATTGTACTTCATTT
LOC_Os08g30340
OsAffx.23126.1.S1_at--350--7071Chr01:2757928..2757952 (25 bp)
GTAATCGATGCTATAACCTAGTTTT
LOC_Os01g05780
OsAffx.23126.1.S1_at--653--6931Chr01:2757999..2758023 (25 bp)
GTAGGATTTGTTAACACACTGCAGT
LOC_Os01g05780
OsAffx.23126.1.S1_at--728--3331Chr01:2758015..2758039 (25 bp)
CACTGCAGTGTTGTTTCATTTGGAT
LOC_Os01g05780
OsAffx.23126.1.S1_at--659--8552Chr08:18545314..18545334 (21 bp)
TGGATGAGTGCAGTATATCCAGTCT
LOC_Os08g30340
Target Sequence 
AAGGAAGATCAACGCCTCCATTTCATAATGAATCTTGTTTAAATGCTCTTTTCTTTTGCATGAGCAATATCAGGCTCAAC
AATATCAGGCATCTGAGAAATCCGACAAATGGAGTTTCTCCTTCAACTACTTCTATGCCAATCTCTTTTTCATGGCTTCG
TTTGCCACAGGTAGTATTTCCATGGGATTGTACTTCATTTAGTAATCGATGCTATAACCTAGTTTTTTTTTTTAAGAAAA
GGTAGTTGTAGGAATTTTATAAAGGAAAACAAGTAGGATTTGTTAACACACTGCAGTGTTGTTTCATTTGGATGAGTGCA
GTATATCCAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis