Browse Element(s) Details


OsAffx.23239.1.S1_x_at

Description tigr:9629.m01409
TID=OsAffx.23239.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1432011/11hypothetical protein
LOC_Os01g141801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14270OsAffx.22046.1.S1_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_s_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_at8/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_x_at3/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270Os.57198.1.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.27239.2.S1_at1/111+7994293..7999812F-box domain containing protein
LOC_Os01g14280OsAffx.2002.1.S1_s_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14280OsAffx.2002.2.S1_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.1.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_x_at10/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.3.S1_x_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.3.S1_x_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.18.S1_x_at5/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.31552.2.S1_at1/111+8003677..8006140hypothetical protein
LOC_Os01g14300OsAffx.9860.1.S1_x_at2/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14300OsAffx.11047.1.S1_at1/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14310OsAffx.22044.1.S1_at11/111+8013354..8015837hypothetical protein
LOC_Os01g14320OsAffx.23239.1.S1_x_at11/111+8020589..8021737hypothetical protein
LOC_Os01g14330OsAffx.9859.1.S1_at11/111+8027686..8028573hypothetical protein
LOC_Os01g14340OsAffx.23240.1.S1_x_at10/111+8029678..8031824hypothetical protein
LOC_Os01g14340OsAffx.23240.2.S1_at1/111+8029678..8031824hypothetical protein
LOC_Os01g14350OsAffx.23240.1.S1_x_at6/111+8034696..8036492hypothetical protein
LOC_Os01g14350OsAffx.23240.2.S1_at1/111+8034696..8036492hypothetical protein
LOC_Os01g14360NANA1+8037758..8038012hypothetical protein
LOC_Os01g14370Os.15122.2.S1_x_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_a_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_at11/111+8044185..8052384TAZ zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23239.1.S1_x_at--771--8231Chr01:8021116..8021140 (25 bp)
GGCAACGGCATGGTCTCACACCAGG
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--499--7811Chr01:8021105..8021129 (25 bp)
GGTCTCACACCAGGACAGGCTCTGG
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--1101--9131Chr01:8020923..8020947 (25 bp)
TGCGGTACGTGCAGATCGACGACGA
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--133--1911Chr01:8020917..8020941 (25 bp)
ACGTGCAGATCGACGACGAGCCCGA
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--332--1951Chr01:8020893..8020917 (25 bp)
ACGGCGACCCGATCGTCAGGATGTG
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--1016--5911Chr01:8020820..8020844 (25 bp)
GAGCTTCGTGGCGATCTGGGACGAC
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--106--4051Chr01:8020809..8020833 (25 bp)
CGATCTGGGACGACGAGGCCTACAA
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--178--4612Chr01:8020725..8020749 (25 bp)
GCGACGTGGTCTACTTCTTCCTGCG
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--244--3811Chr01:8020700..8020724 (25 bp)
CTCCCGGATCTTCGCCGTGGACGTG
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--76--4071Chr01:8020658..8020682 (25 bp)
CGAGTGGCGGTTCTTCGAGATGCTC
LOC_Os01g14320
OsAffx.23239.1.S1_x_at--508--6331Chr01:8020625..8020649 (25 bp)
GATGCGCTACCATTCGTCCCAGTTC
LOC_Os01g14320
Target Sequence 
GGCAACGGCATGGTCTCACACCAGGACAGGCTCTGGTGGGTGGACCTCTCCTATGGCCTCCTCACCTGCGACGTCGTCTA
CGGCGACGACCCCCCGGACCTGCACTACGTACCGCTCCCGCAGGACAGCGAGCTGCCCGCCGGCACGCCGGACCTCGAGA
AGCGCCGCTGCGTCGGGGTGAGCGCCGGCCGTCTGCGGTACGTGCAGATCGACGACGAGCCCGACGGCGACCCGATCGTC
AGGATGTGGACGCTGCTCGATGAAGATGCCGGGGAGTGGGGCTTCGACTGCGCGGCGAGCTTCGTGGCGATCTGGGACGA
CGAGGCCTACAAGGCGACCAAGCTGCCGCGGCAGGTCCCCGCGGTGGCGCTCATCCACCCCACGGGCCCCGGCGACGTGG
TCTACTTCTTCCTGCGCTCCCGGATCTTCGCCGTGGACGTGCGCGCGCGCAGGCTCCTCGAGTGGCGGTTCTTCGAGATG
CTCCACCCGCCGATGCGCTACCATTCGTCCCAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23239.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis