Browse Element(s) Details


OsAffx.23853.1.S1_at

Description tigr:9629.m05822
TID=OsAffx.23853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5929011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59260Os.10827.1.S1_x_at11/111+34577064..34580351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g59260Os.46055.2.S1_x_at5/111+34577064..34580351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g59270OsAffx.11657.1.S1_at11/111+34587556..34588247NA
LOC_Os01g59280OsAffx.31780.2.S1_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_s_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_x_at5/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.38172.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.43567.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.29987.1.S1_at2/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.1.S1_at1/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59290OsAffx.23853.1.S1_at11/111+34601599..34602147hypothetical protein
LOC_Os01g59300OsAffx.11658.1.S1_at10/111+34604010..34607660hypothetical protein
LOC_Os01g59310NANA1+34609413..34609757hypothetical protein
LOC_Os01g59320Os.33610.4.S1_x_at11/111+34619926..34622423expressed protein
LOC_Os01g59320Os.33610.2.A1_at11/111+34619926..34622423expressed protein
LOC_Os01g59340Os.33610.3.S1_x_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.33610.3.S1_s_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.40338.1.S1_at1/111+34622500..34632810D-hydantoinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23853.1.S1_at--999--7051Chr01:34601933..34601957 (25 bp)
GTAAGTGGAGTGTCCATGTCATGAA
LOC_Os01g59290
OsAffx.23853.1.S1_at--526--7271Chr01:34601944..34601968 (25 bp)
GTCCATGTCATGAAGGAATATCCAG
LOC_Os01g59290
OsAffx.23853.1.S1_at--229--671Chr01:34601953..34601977 (25 bp)
ATGAAGGAATATCCAGTATGCACAG
LOC_Os01g59290
OsAffx.23853.1.S1_at--140--6911Chr01:34601968..34601992 (25 bp)
GTATGCACAGTCGAAGGATCCGTCA
LOC_Os01g59290
OsAffx.23853.1.S1_at--360--3231Chr01:34601973..34601997 (25 bp)
CACAGTCGAAGGATCCGTCAAGGAT
LOC_Os01g59290
OsAffx.23853.1.S1_at--965--5291Chr01:34601980..34602004 (25 bp)
GAAGGATCCGTCAAGGATTTCACGG
LOC_Os01g59290
OsAffx.23853.1.S1_at--1124--7931Chr01:34601994..34602018 (25 bp)
GGATTTCACGGAGGGTTCAGAGCCT
LOC_Os01g59290
OsAffx.23853.1.S1_at--814--10511Chr01:34601998..34602022 (25 bp)
TTCACGGAGGGTTCAGAGCCTCGGA
LOC_Os01g59290
OsAffx.23853.1.S1_at--272--1071Chr01:34602005..34602029 (25 bp)
AGGGTTCAGAGCCTCGGATGTCAGA
LOC_Os01g59290
OsAffx.23853.1.S1_at--1157--1151Chr01:34602034..34602058 (25 bp)
AGTAATCTGGGTGACAAGCATGGAC
LOC_Os01g59290
OsAffx.23853.1.S1_at--85--7371Chr01:34602044..34602068 (25 bp)
GTGACAAGCATGGACAGACGAGGAT
LOC_Os01g59290
Target Sequence 
GTAAGTGGAGTGTCCATGTCATGAAGGAATATCCAGTATGCACAGTCGAAGGATCCGTCAAGGATTTCACGGAGGGTTCA
GAGCCTCGGATGTCAGAGGGGAGTAATCTGGGTGACAAGCATGGACAGACGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis