Browse Element(s) Details


OsAffx.23947.1.S1_at

Description tigr:9629.m06620
TID=OsAffx.23947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6674011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66720Os.8821.1.S1_at11/111+39079464..39081799NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g66730OsAffx.29329.2.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730OsAffx.29329.1.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.3.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.2.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66750OsAffx.2423.1.S1_at8/111+39094042..39095129hypothetical protein
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed
LOC_Os01g66780NANA1+39104890..39105914hypothetical protein
LOC_Os01g66790NANA1+39106815..39112909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66800Os.46039.1.S1_at10/111+39114212..39115266hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23947.1.S1_at--453--7411Chr01:39089212..39089236 (25 bp)
GTGATATGCTGGAACCCTGACGAAA
LOC_Os01g66740
OsAffx.23947.1.S1_at--35--1011Chr01:39089239..39089263 (25 bp)
AGGATTCTAGGTTTGTCTCTCGGCA
LOC_Os01g66740
OsAffx.23947.1.S1_at--489--2951Chr01:39089276..39089300 (25 bp)
AAGGCCAATTTCCTCGAGGTCTTGA
LOC_Os01g66740
OsAffx.23947.1.S1_at--556--2251Chr01:39089334..39089358 (25 bp)
AAATAACAGTCTTTCAGGGCCCATC
LOC_Os01g66740
OsAffx.23947.1.S1_at--318--291Chr01:39089465..39089489 (25 bp)
ATAGTATCGGCCTTCAGCACAACAA
LOC_Os01g66740
OsAffx.23947.1.S1_at--879--2671Chr01:39089488..39089512 (25 bp)
AAGCTGACCGGTTCAATTCCAGGGA
LOC_Os01g66740
OsAffx.23947.1.S1_at--279--5611Chr01:39089554..39089578 (25 bp)
GACAATTTACTGTCTGGCCCTATTC
LOC_Os01g66740
OsAffx.23947.1.S1_at--370--4551Chr01:39089570..39089594 (25 bp)
GCCCTATTCCAGTTGCTTTATCAAA
LOC_Os01g66740
OsAffx.23947.1.S1_at--119--5691Chr01:39089601..39089625 (25 bp)
GACTTCATGCTTTTCTGGGAACCAA
LOC_Os01g66740
OsAffx.23947.1.S1_at--649--8631Chr01:39089616..39089640 (25 bp)
TGGGAACCAAGGTCTCTGCGGTGTA
LOC_Os01g66740
OsAffx.23947.1.S1_at--683--10831Chr01:39089720..39089744 (25 bp)
TTGTGGGAGCCTTGTACATCTCTCA
LOC_Os01g66740
Target Sequence 
GTGATATGCTGGAACCCTGACGAAAACAGGATTCTAGGTTTGTCTCTCGGCAGTCTAGGACTGCAAGGCCAATTTCCTCG
AGGTCTTGAGCATTGTACATCTCTGGTTAGACTGGACTTGTCAAATAACAGTCTTTCAGGGCCCATCCCTTCTGGCATCT
CATGGCAGCTGCCGGATTTGTCATCTCTGAACCTCTCCTACAATCGTTTTTCAGGCGAAATACCTGTTAATATCAGTGAG
ATGACATATCTATATAGTATCGGCCTTCAGCACAACAAGCTGACCGGTTCAATTCCAGGGAAATTCGCTCTGCTTTCTCG
GTTAGAGTCGTTCAATGTTTCAGACAATTTACTGTCTGGCCCTATTCCAGTTGCTTTATCAAAGTTTTCGACTTCATGCT
TTTCTGGGAACCAAGGTCTCTGCGGTGTACCGTTTGATAGTTGCAGCACAAGCTACGGTGACTACAGTATCGGAATAATC
GGAGCGGCCGTCGGGTTCGTCGTGGGTTTTGTGGGAGCCTTGTACATCTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis