Browse Element(s) Details


OsAffx.2401.1.S1_at

Description tigr:9629.m06376
TID=OsAffx.2401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6438011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64330Os.51661.1.S1_at11/111+37676295..37678921expressed protein
LOC_Os01g64340OsAffx.2400.1.S1_at11/111+37679112..37679516hypothetical protein
LOC_Os01g64350NANA1+37680929..37682222hypothetical protein
LOC_Os01g64360Os.49787.1.S1_at11/111+37685053..37686407Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g64370Os.12092.4.S1_at10/111+37687213..37690283expressed protein
LOC_Os01g64370Os.47736.1.S1_at1/111+37687213..37690283expressed protein
LOC_Os01g64380OsAffx.2401.1.S1_at11/111+37692398..37692816expressed protein
LOC_Os01g64390OsAffx.23913.2.S1_at11/111+37703198..37703931hypothetical protein
LOC_Os01g64390OsAffx.23913.1.S1_at1/111+37703198..37703931hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_s_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64410OsAffx.23914.1.S1_at11/111+37708329..37709063uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2401.1.S1_at--273--9371Chr01:37692599..37692623 (25 bp)
TCGACAGGCTCATCAGCCTCAGGCA
LOC_Os01g64380
OsAffx.2401.1.S1_at--859--5651Chr01:37692597..37692621 (25 bp)
GACAGGCTCATCAGCCTCAGGCACT
LOC_Os01g64380
OsAffx.2401.1.S1_at--394--1691Chr01:37692585..37692609 (25 bp)
AGCCTCAGGCACTCCAGCTTGGAAC
LOC_Os01g64380
OsAffx.2401.1.S1_at--1070--9611Chr01:37692581..37692605 (25 bp)
TCAGGCACTCCAGCTTGGAACTCTT
LOC_Os01g64380
OsAffx.2401.1.S1_at--552--931Chr01:37692579..37692603 (25 bp)
AGGCACTCCAGCTTGGAACTCTTGC
LOC_Os01g64380
OsAffx.2401.1.S1_at--168--9231Chr01:37692573..37692597 (25 bp)
TCCAGCTTGGAACTCTTGCCGTTGT
LOC_Os01g64380
OsAffx.2401.1.S1_at--592--3371Chr01:37692571..37692595 (25 bp)
CAGCTTGGAACTCTTGCCGTTGTTC
LOC_Os01g64380
OsAffx.2401.1.S1_at--774--4911Chr01:37692569..37692593 (25 bp)
GCTTGGAACTCTTGCCGTTGTTCCT
LOC_Os01g64380
OsAffx.2401.1.S1_at--372--8171Chr01:37692565..37692589 (25 bp)
GGAACTCTTGCCGTTGTTCCTGCTC
LOC_Os01g64380
OsAffx.2401.1.S1_at--1029--2531Chr01:37692563..37692587 (25 bp)
AACTCTTGCCGTTGTTCCTGCTCAT
LOC_Os01g64380
OsAffx.2401.1.S1_at--83--10711Chr01:37692558..37692582 (25 bp)
TTGCCGTTGTTCCTGCTCATCCTCG
LOC_Os01g64380
Target Sequence 
TCGACAGGCTCATCAGCCTCAGGCACTCCAGCTTGGAACTCTTGCCGTTGTTCCTGCTCATCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis