Browse Element(s) Details


OsAffx.24115.1.S1_at

Description tigr:9630.m00498
TID=OsAffx.24115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine-specific protein kinase (EC 2.7.1.-) F27F23.3 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g057306/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05692Os.17069.1.A1_at11/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05692OsAffx.5663.1.S1_at1/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05700OsAffx.11906.1.S1_at11/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05700Os.47399.1.A1_at3/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05710Os.8141.1.S1_at11/112+2804122..2807633expressed protein
LOC_Os02g05720OsAffx.11907.1.S1_at11/112+2812235..2816191PPR986-12, putative, expressed
LOC_Os02g05730OsAffx.24115.1.S1_at6/112+2816878..2824086Protein kinase domain containing protein, expressed
LOC_Os02g05744OsAffx.11908.1.S1_at10/112+2824486..2830255Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g05760OsAffx.31174.4.S1_x_at2/112+2833224..2836631hypothetical protein
LOC_Os02g05760OsAffx.31174.5.S1_x_at1/112+2833224..2836631hypothetical protein
LOC_Os02g05770Os.12925.1.S1_at11/112+2838177..2842546expressed protein
LOC_Os02g05780OsAffx.24117.1.S1_at10/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.46673.1.S1_x_at7/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.49252.1.S1_x_at1/112+2842900..2847426hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24115.1.S1_at--804--5851Chr02:2817168..2817192 (25 bp)
GACCACGGCAGCATCGAGAGCATTG
LOC_Os02g05730
OsAffx.24115.1.S1_at--805--7651Chr02:2817121..2817145 (25 bp)
GGGAGGCTACGACATCAACTCGGTC
LOC_Os02g05730
OsAffx.24115.1.S1_at--919--351Chr02:2817108..2817132 (25 bp)
ATCAACTCGGTCTGGAAAGTCGCTG
LOC_Os02g05730
OsAffx.24115.1.S1_at--90--2331Chr02:2817093..2817117 (25 bp)
AAAGTCGCTGACTTGGCGCTGCATT
LOC_Os02g05730
OsAffx.24115.1.S1_at--277--9071Chr02:2817074..2817098 (25 bp)
TGCATTGCAAGCGAGAGGTCTCCAG
LOC_Os02g05730
OsAffx.24115.1.S1_at--939--1331Chr02:2816883..2816907 (25 bp)
AGAGTTTCTCCTGGGCCTGCAGTAA
LOC_Os02g05730
OsAffx.24115.1.S1_at--351--5651Chr02:2816855..2816879 (25 bp)
GACAGCTTCCATCTTACATGCGAAA
NONE
OsAffx.24115.1.S1_at--226--2051Chr02:2816778..2816802 (25 bp)
ACTTAGGTTTGTGTCGATTTCGTAG
NONE
OsAffx.24115.1.S1_at--536--10692Chr04:17309001..17309070 (24 bp)
TTGCTCCAGTTCATTTTCTTTTTCT
NONE
OsAffx.24115.1.S1_at--1068--6831Chr02:2816688..2816712 (25 bp)
GTTTCTACTTTCTATGACCATCCAT
NONE
OsAffx.24115.1.S1_at--168--9551Chr02:2816678..2816702 (25 bp)
TCTATGACCATCCATTTCGCTTGAT
NONE
Target Sequence 
GACCACGGCAGCATCGAGAGCATTGTGGATGCAAGGATGGGAGGAGGGGGAGGCTACGACATCAACTCGGTCTGGAAAGT
CGCTGACTTGGCGCTGCATTGCAAGCGAGAGGTCTCCAGGGAGCGGCCTACGATGACAGAGGTGGTGGCACAGCTTAAGG
AGAGCTTGGAGCTCGAGAGCCATGGCGATAGGAAGCACTTGGTGACTGGTGATGATGACGTGAGCGTGAGCAATCTTGGA
GAGGAGACTGCACTTGAGGTAGAAGAGCAATCTGGGGAGATATCAAGAGTTTCTCCTGGGCCTGCAGTAAGATGACAGCT
TCCATCTTACATGCGAAATGGAGGTTCGATCTTACATATATAAATTTTCTACTGTTTATCTTCAAAAAAAACTTAGGTTT
GTGTCGATTTCGTAGTTGTAGTTGTGAAACTTGAAATGAAACTTTCATTTGCTCCAGTTCATTTTCTTTTTCTTTTCTTT
GTTTCTACTTTCTATGACCATCCATTTCGCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis