Browse Element(s) Details


OsAffx.24364.1.S1_at

Description tigr:9630.m02040
TID=OsAffx.24364.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2128010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21260Os.54174.1.S1_at11/112+12614030..12618433F-box domain containing protein, expressed
LOC_Os02g21270OsAffx.12143.1.S1_at10/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.24433.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.16331.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21280OsAffx.24364.1.S1_at10/112+12630129..12633481expressed protein
LOC_Os02g21290OsAffx.12144.1.S1_at10/112+12634413..12635833hypothetical protein
LOC_Os02g21300OsAffx.2707.1.S1_at11/112+12645468..12647677transposon protein, putative, unclassified, expressed
LOC_Os02g21310OsAffx.24365.1.S1_x_at9/112+12650102..12651466expressed protein
LOC_Os02g21320OsAffx.24453.1.S1_x_at8/112+12652063..12654527hypothetical protein
LOC_Os02g21320OsAffx.24453.3.S1_x_at6/112+12652063..12654527hypothetical protein
LOC_Os02g21330Os.52060.1.S1_at11/112+12656328..12657274expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24364.1.S1_at--1038--3331NONE
CACGTCCTCGAAGGTGCCGAGGTTG
NONE
OsAffx.24364.1.S1_at--1075--7251Chr02:12630547..12630571 (25 bp)
GTCCTCTGCATCACGAGATCTGGTG
LOC_Os02g21280
OsAffx.24364.1.S1_at--205--3351Chr02:12630536..12630560 (25 bp)
CACGAGATCTGGTGAAGTTATCAAC
LOC_Os02g21280
OsAffx.24364.1.S1_at--134--2831Chr02:12630522..12630546 (25 bp)
AAGTTATCAACTACCAGGCCTTCAC
LOC_Os02g21280
OsAffx.24364.1.S1_at--252--10351Chr02:12630519..12630543 (25 bp)
TTATCAACTACCAGGCCTTCACAAA
LOC_Os02g21280
OsAffx.24364.1.S1_at--268--791Chr02:12630507..12630531 (25 bp)
AGGCCTTCACAAACTCCAAGGGTGT
LOC_Os02g21280
OsAffx.24364.1.S1_at--1010--4411Chr02:12630505..12630529 (25 bp)
GCCTTCACAAACTCCAAGGGTGTCT
LOC_Os02g21280
OsAffx.24364.1.S1_at--831--1051Chr02:12630489..12630513 (25 bp)
AGGGTGTCTACATTGTTGCGGAGAC
LOC_Os02g21280
OsAffx.24364.1.S1_at--177--8731Chr02:12630485..12630509 (25 bp)
TGTCTACATTGTTGCGGAGACGATG
LOC_Os02g21280
OsAffx.24364.1.S1_at--260--5991Chr02:12630469..12630493 (25 bp)
GAGACGATGCCAGAGAGTGACCGTT
LOC_Os02g21280
OsAffx.24364.1.S1_at--147--5831Chr02:12630451..12630475 (25 bp)
GACCGTTGGGAGTCATGCTTGGCAA
LOC_Os02g21280
Target Sequence 
CACGTCCTCGAAGGTGCCGAGGTTGCCGTCCTCTGCATCACGAGATCTGGTGAAGTTATCAACTACCAGGCCTTCACAAA
CTCCAAGGGTGTCTACATTGTTGCGGAGACGATGCCAGAGAGTGACCGTTGGGAGTCATGCTTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis