Browse Element(s) Details


OsAffx.24544.1.S1_at

Description tigr:9630.m03109
TID=OsAffx.24544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3277011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32720NANA2+19427742..19428566hypothetical protein
LOC_Os02g32730Os.8133.1.S1_at11/112+19431875..19436229alkaline/neutral invertase, putative, expressed
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32840Os.15931.1.S1_x_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32840Os.15931.1.S1_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24544.1.S1_at--547--9671Chr02:19453931..19453955 (25 bp)
TCAGCCACAGTGATGATCTGGATCA
LOC_Os02g32770
OsAffx.24544.1.S1_at--1108--1351Chr02:19453902..19453926 (25 bp)
AGAGCTTATTCGGTGGCCAAGAGTA
LOC_Os02g32770
OsAffx.24544.1.S1_at--490--2311Chr02:19453871..19453895 (25 bp)
AAAGTACAAGCCGAGGTGCGCCAAG
LOC_Os02g32770
OsAffx.24544.1.S1_at--468--8051Chr02:19453776..19453800 (25 bp)
GGAGACCTTACGATTGCATTGCCCT
LOC_Os02g32770
OsAffx.24544.1.S1_at--557--10071Chr02:19453741..19453765 (25 bp)
TAGTGCCCCATAGATGCCGTGAGAC
LOC_Os02g32770
OsAffx.24544.1.S1_at--757--8191Chr02:19453632..19453656 (25 bp)
GGAAGACCCTGAGGAGTTCATGCCA
LOC_Os02g32770
OsAffx.24544.1.S1_at--143--10431Chr02:19453564..19453588 (25 bp)
TTGAGTACCTTCCATTTGGTTCCGG
LOC_Os02g32770
OsAffx.24544.1.S1_at--1065--7831Chr02:19453547..19453571 (25 bp)
GGTTCCGGTCGTAGAATTTGTCCAG
LOC_Os02g32770
OsAffx.24544.1.S1_at--967--6471Chr02:19453509..19453533 (25 bp)
GATAGCCAACATAGAGCTACCCCTA
LOC_Os02g32770
OsAffx.24544.1.S1_at--528--10011Chr02:19453486..19453510 (25 bp)
TAGCTAGCCTCCTTTACCATTTTGA
LOC_Os02g32770
OsAffx.24544.1.S1_at--472--10731Chr02:19453399..19453423 (25 bp)
TTGCAGCTAAACTCACTAGCCTATG
LOC_Os02g32770
Target Sequence 
TCAGCCACAGTGATGATCTGGATCATGGCAGAGCTTATTCGGTGGCCAAGAGTAATGACAAAAGTACAAGCCGAGGTGCG
CCAAGCCCTCCAAGGGAAGGTCACAGTCACTGAGGATGATATTGTTAGGCTAAACTATCTAAAAATGGTGATCAAGGAGA
CCTTACGATTGCATTGCCCTGGACCCCTCCTAGTGCCCCATAGATGCCGTGAGACATGCAAGGTTATGGGCTATGATGTG
TTGAAAGGTACATGTGTGTTTGTTAATGTGTGGGCATTGGGCAGGGACCCTAAGTATTGGGAAGACCCTGAGGAGTTCAT
GCCAGAGAGGTTTGAAAATAGTGATATGGACTACAAAGGGAATACTTTTGAGTACCTTCCATTTGGTTCCGGTCGTAGAA
TTTGTCCAGGTATAAACCTTGGGATAGCCAACATAGAGCTACCCCTAGCTAGCCTCCTTTACCATTTTGATTGGAAATTG
CCCGACGAAATGGCATCCAAGGACCTTGATATGCAAGAGGCACCTGGAATGGTTGCAGCTAAACTCACTAGCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis