Browse Element(s) Details


OsAffx.24557.1.S1_at

Description tigr:9630.m03196
TID=OsAffx.24557.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3363011/11WD-40 repeat family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33600NANA2+19995126..19995953VQ motif family protein
LOC_Os02g33610Os.50951.1.S1_at11/112+20000095..20007983RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os02g33620Os.45957.4.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.14084.1.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.4917.1.S1_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33630OsAffx.24557.1.S1_at11/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33630Os.30311.1.S1_at1/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33640Os.31623.1.S1_x_at11/112+20028347..20030613expressed protein
LOC_Os02g33640Os.31623.1.S1_at11/112+20028347..20030613expressed protein
LOC_Os02g33650OsAffx.12335.1.S1_at11/112+20033376..20033645hypothetical protein
LOC_Os02g33660OsAffx.12336.1.S1_at10/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.27834.1.S1_x_at1/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.51123.1.S1_at1/112+20034994..20037551hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24557.1.S1_at--1027--4771Chr02:20022083..20022107 (25 bp)
GCTGCCAACAAGATTACCAATATTC
LOC_Os02g33630
OsAffx.24557.1.S1_at--289--3191Chr02:20021957..20022090 (25 bp)
CAATATTCAGTTCTCTCAGGGCCAT
LOC_Os02g33630
OsAffx.24557.1.S1_at--400--3751Chr02:20021943..20021967 (25 bp)
CTCAGGGCCATCCATCTAGGATGAT
LOC_Os02g33630
OsAffx.24557.1.S1_at--314--5571Chr02:20021909..20021933 (25 bp)
GAAAGATCACAAAATCCGAGTCTCT
LOC_Os02g33630
OsAffx.24557.1.S1_at--962--3031Chr02:20021897..20021921 (25 bp)
AATCCGAGTCTCTGAAGGTCATAAG
LOC_Os02g33630
OsAffx.24557.1.S1_at--250--6431Chr02:20021877..20021897 (21 bp)
GATCACCCAAAAGTTTCAAGGACAA
LOC_Os02g33630
OsAffx.24557.1.S1_at--833--1011Chr02:20021211..20021235 (25 bp)
AGGTCCAAGGTGTTGGTGCCTCCGT
LOC_Os02g33630
OsAffx.24557.1.S1_at--622--3071Chr02:20020987..20021011 (25 bp)
CTACGACCGGGAGCGGTGCTCGTTC
LOC_Os02g33630
OsAffx.24557.1.S1_at--39--3791Chr02:20020969..20020993 (25 bp)
CTCGTTCGGCACGTGGTTCGTCGTG
LOC_Os02g33630
OsAffx.24557.1.S1_at--807--9331Chr02:20020887..20020911 (25 bp)
TCGCTGAGGTACGTGAACTGCGCCG
LOC_Os02g33630
OsAffx.24557.1.S1_at--278--2551Chr02:20020872..20020896 (25 bp)
AACTGCGCCGGGATGGACGACTGCC
LOC_Os02g33630
Target Sequence 
GCTGCCAACAAGATTACCAATATTCAGTTCTCTCAGGGCCATCCATCTAGGATGATAATCACATCGAAAGATCACAAAAT
CCGAGTCTCTGAAGGTCATAAGATCACCCAAAAGTTTCAAGGACAATGGAGGTCCAAGGTGTTGGTGCCTCCGTCGCTGA
CGCCCGACGGCAGGTACCTGATATCGGCGGGGAGGGACTCCAAGATCCGCATCTGGAACTTCGACGGCGGCGGCAGGCGG
CGGAGGGTGGTGAGCTCGCGCGAGCTCTTCTTCTCCGAGGGCGTCACGGCGGTGGCGCCGTGGGCGAGGGCGATGGGCGG
CGGCGGCGGCGGAGCGGACGCGCCGACGCTGTGCTACGACCGGGAGCGGTGCTCGTTCGGCACGTGGTTCGTCGTGCCCG
ACGGGGCGGCGGCGGCGGCGGCTACGACGTGGCCGGAGGAGAGGCTGCTGCCGTCGCTGAGGTACGTGAACTGCGCCGGG
ATGGACGACTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis