Browse Element(s) Details


OsAffx.24594.1.S1_at

Description tigr:9630.m03461
TID=OsAffx.24594.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3626411/11Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g362201/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36220Os.49721.1.S1_at11/112+21847712..21857723Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36220OsAffx.24594.1.S1_at1/112+21847712..21857723Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36230Os.14919.1.S1_at2/112+21861613..21863711transposon protein, putative, Mutator sub-class
LOC_Os02g36230OsAffx.15585.1.S1_at1/112+21861613..21863711transposon protein, putative, Mutator sub-class
LOC_Os02g36230OsAffx.29313.1.S1_at1/112+21861613..21863711transposon protein, putative, Mutator sub-class
LOC_Os02g36239NANA2+21873425..21873643NA
LOC_Os02g36250OsAffx.29972.1.S1_x_at2/112+21879210..21879506hypothetical protein
LOC_Os02g36264OsAffx.24594.1.S1_at11/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36264Os.49721.1.S1_at2/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36280Os.17571.1.S1_at11/112+21898729..21900369Cytochrome P450 family protein, expressed
LOC_Os02g36290OsAffx.24595.2.S1_x_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.2.S1_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.1.S1_s_at7/112+21907156..21907607hypothetical protein
LOC_Os02g36300Os.56195.1.S1_at11/112+21911530..21912810Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36310OsAffx.24596.1.S1_at11/112+21915738..21916590hypothetical protein
LOC_Os02g36320OsAffx.12372.1.S1_at11/112+21917048..21918094Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24594.1.S1_at--255--4951Chr02:21890376..21890400 (25 bp)
GCATTGCTTTGTGAAACATATCCAT
LOC_Os02g36264
OsAffx.24594.1.S1_at--608--2511Chr02:21890362..21890386 (25 bp)
AACATATCCATGGTTGAGTTTATTA
LOC_Os02g36264
OsAffx.24594.1.S1_at--746--6651Chr02:21890350..21890374 (25 bp)
GTTGAGTTTATTATTCCGATGGGAT
LOC_Os02g36264
OsAffx.24594.1.S1_at--208--3011Chr02:21890313..21890337 (25 bp)
AATGAACTGCATGACAAGATAAGGA
LOC_Os02g36264
OsAffx.24594.1.S1_at--753--8171Chr02:21890291..21890315 (25 bp)
GGAAGCAGCTTAGGGATGTCCAATT
LOC_Os02g36264
OsAffx.24594.1.S1_at--19--10451Chr02:21890282..21890306 (25 bp)
TTAGGGATGTCCAATTACAACCATC
LOC_Os02g36264
OsAffx.24594.1.S1_at--200--4371Chr02:21890202..21890226 (25 bp)
CCACGCTTTCCGCAATCTATTGAGT
LOC_Os02g36264
OsAffx.24594.1.S1_at--577--9291Chr02:21890194..21890218 (25 bp)
TCCGCAATCTATTGAGTGGATACTG
LOC_Os02g36264
OsAffx.24594.1.S1_at--379--3292Chr02:21889937..21890162 (25 bp)
CAAACCTGCCAGGACTGAATTTTAT
LOC_Os02g36264
OsAffx.24594.1.S1_at--754--7931Chr02:21889778..21889802 (25 bp)
GGATTATTCACATTCGGAAGATCGA
LOC_Os02g36264
OsAffx.24594.1.S1_at--146--5571Chr02:21889694..21889715 (22 bp)
GAAAGCTTTGTATTTACGTGTCAAC
LOC_Os02g36264
Target Sequence 
GCATTGCTTTGTGAAACATATCCATGGTTGAGTTTATTATTCCGATGGGATATGCAGCATAAGAATGAACTGCATGACAA
GATAAGGAAGCAGCTTAGGGATGTCCAATTACAACCATCTTCATACGACACTGCATGGGTGGCCATGGTGCCAGTGCAGG
GCTCTCATCAAACTCCACGCTTTCCGCAATCTATTGAGTGGATACTGCAAAACCAATATGATGATGGATCTTGGGGTACA
AACCTGCCAGGACTGAATTTTATTGGAAGAAATTTCTCAGTTGCCATGGATGAGCAAACTGTTGCTCCTGTGGGTTTCAA
CATTACCTTTTCTGGCTTGCTTAGCCTTGCCACTAGAACGGGTTTGGAATTGCCTGTTATGCAAACGGATATTGATGGGA
TTATTCACATTCGGAAGATCGAATTGGAAAGCTTTGTATTTACGTGTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis