Browse Element(s) Details


OsAffx.24875.1.S1_at

Description tigr:9630.m05466
TID=OsAffx.24875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5507011/11hypothetical protein
LOC_Os08g105801/11Methyl-CpG binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55010Os.50477.1.S1_at11/112+33694546..33700463expressed protein
LOC_Os02g55010Os.4222.1.S1_at1/112+33694546..33700463expressed protein
LOC_Os02g55020Os.53988.1.S1_at10/112+33700647..33702979expressed protein
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein
LOC_Os02g55110Os.21370.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55110OsAffx.24876.1.S1_at11/112+33745993..33752342expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24875.1.S1_at--612--7131Chr02:33727177..33727201 (25 bp)
GTCATTTTCTCGACCAATCAATTGG
LOC_Os02g55070
OsAffx.24875.1.S1_at--323--6091Chr02:33727359..33727383 (25 bp)
GAGTCAAGCTAGATCCTTGTCCATA
LOC_Os02g55070
OsAffx.24875.1.S1_at--625--5231Chr02:33727437..33727461 (25 bp)
GAATAACCCTTCATTGCCCATTAGT
LOC_Os02g55070
OsAffx.24875.1.S1_at--495--4531Chr02:33727452..33727476 (25 bp)
GCCCATTAGTGAGGCATCATCCAAT
LOC_Os02g55070
OsAffx.24875.1.S1_at--882--6551Chr02:33727491..33727515 (25 bp)
GATTACCCAGCAGCTTTTGAGCGAC
LOC_Os02g55070
OsAffx.24875.1.S1_at--300--10771Chr02:33727507..33727531 (25 bp)
TTGAGCGACTCACATGTTGCACCAG
LOC_Os02g55070
OsAffx.24875.1.S1_at--921--6231Chr02:33727551..33727575 (25 bp)
GATGGCAAGGGTTGGTTCTCTTCTT
LOC_Os02g55070
OsAffx.24875.1.S1_at--318--10591Chr02:33727566..33727590 (25 bp)
TTCTCTTCTTTCTCTGCTTCAGAAA
LOC_Os02g55070
OsAffx.24875.1.S1_at--1135--1111Chr02:33727596..33727620 (25 bp)
AGTGCCAGCCAATTTACCCAAGTTT
LOC_Os02g55070
OsAffx.24875.1.S1_at--438--7491Chr02:33727657..33727681 (25 bp)
GTGGGAATCAGCTCAGCACTTGATA
LOC_Os02g55070
OsAffx.24875.1.S1_at--55--2372Chr08:6220524..6220547 (23 bp)
AAACCCTCCTGGCATCTCAAGAAAG
LOC_Os08g10580
Target Sequence 
GTCATTTTCTCGACCAATCAATTGGGGAGCCAGTGATGTAGATTTGCAAGTTGATGTATCTCAAGAACTAAAGAGCCCTC
ACCCCAACTCATTGAGTCAAGCTAGATCCTTGTCCATAGATGACTTGTTAAGCCATCTAGATGATTGCATAGTTGAGCAA
AAGCCTGCAGGGAATAACCCTTCATTGCCCATTAGTGAGGCATCATCCAATGAATTGTTGGAGAAGATTACCCAGCAGCT
TTTGAGCGACTCACATGTTGCACCAGCCTCAGATGAGAAACGGGTGATGGCAAGGGTTGGTTCTCTTCTTTCTCTGCTTC
AGAAAGACGCAGTGCCAGCCAATTTACCCAAGTTTGAGCCCAATGACAGCGGCAAGATTGGTGTAGTTGAAGTGGGAATC
AGCTCAGCACTTGATATGGGAATCGCAAATGGCACAAACCCTCCTGGCATCTCAAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis