Browse Element(s) Details


OsAffx.24953.1.S1_s_at

Description tigr:9631.m00248
TID=OsAffx.24953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Carotene hydroxylase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0337011/11beta-carotene hydroxylase, putative, expressed
LOC_Os10g389401/11beta-carotene hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03290Os.6143.1.S1_s_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03290Os.6143.2.S1_x_at11/113+1388347..1390093protein kinase, putative, expressed
LOC_Os03g03300OsAffx.12718.1.S1_at10/113+1394208..1395135expressed protein
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016119biological_processcarotene metabolism
GO:0042411molecular_functionbeta-carotene hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24953.1.S1_s_at--256--872Chr10:20415937..20415961 (25 bp)
ATGGCGTACATGTTCGTCCACGACG
LOC_Os10g38940
OsAffx.24953.1.S1_s_at--203--331Chr03:1415399..1415423 (25 bp)
ATACATCACATGGACAAGTTCGAAG
LOC_Os03g03370
OsAffx.24953.1.S1_s_at--801--1211Chr03:1415383..1415407 (25 bp)
AGTTCGAAGGTGTGCCATATGGGCT
LOC_Os03g03370
OsAffx.24953.1.S1_s_at--1010--251Chr03:1415367..1415391 (25 bp)
ATATGGGCTGTTCCTTGGTCCCAAG
LOC_Os03g03370
OsAffx.24953.1.S1_s_at--527--8151Chr03:1414982..1415006 (25 bp)
GGAAAGAGACCTTAGATGCGATCCA
LOC_Os03g03370
OsAffx.24953.1.S1_s_at--431--211Chr03:1414923..1414947 (25 bp)
ATTTGCTGTCATCTCTTATTAGTTT
LOC_Os03g03370
OsAffx.24953.1.S1_s_at--388--3471Chr03:1414892..1414916 (25 bp)
CAGTGGCAATTGTAGCCTTGTAATA
LOC_Os03g03370
OsAffx.24953.1.S1_s_at--742--7071Chr03:1414873..1414897 (25 bp)
GTAATATGCTTTTCTGTCCTGTTAA
LOC_Os03g03370
OsAffx.24953.1.S1_s_at--500--10871Chr03:1414812..1414836 (25 bp)
TTGGACGGTGGAGCACACAGGTATT
LOC_Os03g03370
OsAffx.24953.1.S1_s_at--654--8331Chr03:1414771..1414795 (25 bp)
GGCTGAATGGCTGATGCTTTTGCTA
LOC_Os03g03370
OsAffx.24953.1.S1_s_at--996--6331Chr03:1414759..1414783 (25 bp)
GATGCTTTTGCTAGTACTGCTGGTA
LOC_Os03g03370
Target Sequence 
ATGGCGTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCGGTGGGGCCCATCGCCAACGTGCCCTACTTCCG
GCGGGTCGCCGCCGCCCACCAGATACATCACATGGACAAGTTCGAAGGTGTGCCATATGGGCTGTTCCTTGGTCCCAAGG
AGCTGGAGGAGGTGGGTGGGATTGAGGAGCTGGAGAAGGAGATCAAGAGGAGGATTAAGAGGAAAGAGACCTTAGATGCG
ATCCAATGAGAGCTACTTATCACACATTTTTTTCTTTTTATTTGCTGTCATCTCTTATTAGTTTTTGCTTCAGTGGCAAT
TGTAGCCTTGTAATATGCTTTTCTGTCCTGTTAATAGAAGAATAATTTAGATAGATATTTGGAAGCTCATTTGGACGGTG
GAGCACACAGGTATTAGAAATGATGTGCTGGGGCTGAATGGCTGATGCTTTTGCTAGTACTGCTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24953.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis