Browse Element(s) Details


OsAffx.24964.5.S1_at

Description tigr:9630.m05494
TID=OsAffx.24964.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5529011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55230OsAffx.12651.1.S1_at11/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55230OsAffx.3076.1.S1_s_at1/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed
LOC_Os02g55270OsAffx.24882.1.S1_at11/112+33838016..33839278NLI interacting factor-like phosphatase family protein
LOC_Os02g55280OsAffx.12653.1.S1_at11/112+33840744..33841912NLI interacting factor-like phosphatase family protein
LOC_Os02g55290OsAffx.24964.5.S1_at11/112+33845428..33847925hypothetical protein
LOC_Os02g55290Os.21430.1.S1_at4/112+33845428..33847925hypothetical protein
LOC_Os02g55290OsAffx.24964.4.S1_x_at1/112+33845428..33847925hypothetical protein
LOC_Os02g55300Os.11760.1.S1_at11/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55300Os.11760.1.S2_at10/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55310OsAffx.24883.1.S1_at11/112+33851699..33853536pentatricopeptide, putative, expressed
LOC_Os02g55320Os.5243.1.S1_at11/112+33853956..33858973Two-component response regulator ARR12, putative, expressed
LOC_Os02g55330Os.52557.1.S1_at10/112+33870784..33874639expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24964.5.S1_at--473--4451Chr02:33846004..33846028 (25 bp)
GCCTTTCTTGCTTAATCAGGTGGCT
LOC_Os02g55290
OsAffx.24964.5.S1_at--973--51Chr02:33845955..33845979 (25 bp)
ATTGAGCGACACACATACTCTCTAC
LOC_Os02g55290
OsAffx.24964.5.S1_at--884--2851Chr02:33845897..33845921 (25 bp)
AAGTGCTCACCGAATTGTCTATCAA
LOC_Os02g55290
OsAffx.24964.5.S1_at--4--3031Chr02:33845874..33845898 (25 bp)
AATCCTCAGTTTCTTTCTAGTGGGC
LOC_Os02g55290
OsAffx.24964.5.S1_at--614--7331Chr02:33845783..33845807 (25 bp)
GTGCAGTACTATCCAGATTCTCCAT
LOC_Os02g55290
OsAffx.24964.5.S1_at--795--9231Chr02:33845763..33845787 (25 bp)
TCCATGGCCGGTTTACTTGAATTCA
LOC_Os02g55290
OsAffx.24964.5.S1_at--335--10791Chr02:33845688..33845712 (25 bp)
TTGATCATGCTATGCAACGCCTGGT
LOC_Os02g55290
OsAffx.24964.5.S1_at--480--2611Chr02:33845673..33845697 (25 bp)
AACGCCTGGTTATCTGATGCTCCTA
LOC_Os02g55290
OsAffx.24964.5.S1_at--1120--6331Chr02:33845658..33845682 (25 bp)
GATGCTCCTACACAGATTGGTATGG
LOC_Os02g55290
OsAffx.24964.5.S1_at--1008--31Chr02:33845527..33845551 (25 bp)
ATTGTCAGGGTCTCGGCTGGGCTAC
LOC_Os02g55290
OsAffx.24964.5.S1_at--439--8651Chr02:33845510..33845534 (25 bp)
TGGGCTACACATGGGCCGCTAGGCA
LOC_Os02g55290
Target Sequence 
GCCTTTCTTGCTTAATCAGGTGGCTGAAACACATTTAGTGGATCAGATTATTGAGCGACACACATACTCTCTACAGTATA
CAAAACTGATAGCTACAGTTGCATGGCAAGTGCTCACCGAATTGTCTATCAATCCTCAGTTTCTTTCTAGTGGGCTAAGA
TTAGTACATGCATCAGAGGAGATACATGAGGTTATACTGGTGGTGGAGTGGAATACATTTAGTGCAGTACTATCCAGATT
CTCCATGGCCGGTTTACTTGAATTCAATCCAAGAAGGGACAATCATATGGTGGTAATGACTGGGATATATGCATGGTTGA
TCATGCTATGCAACGCCTGGTTATCTGATGCTCCTACACAGATTGGTATGGTTGCTGTACTTGAGCATCAAGTTTTACAA
GAGGAACTTCAAACATCATTCGATCCAGGAGGTTTTCTTCATCGACTTGGGGACAAGCCGAATTTCAAGAAGAAGGGATT
GTCAGGGTCTCGGCTGGGCTACACATGGGCCGCTAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24964.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis