Browse Element(s) Details


OsAffx.25105.1.S1_at

Description tigr:9631.m01572
TID=OsAffx.25105.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1616011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein
LOC_Os03g16170Os.35013.1.S1_at11/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16170Os.27906.1.S1_a_at1/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified
LOC_Os03g16190NANA3+8906767..8907291retrotransposon protein, putative, unclassified
LOC_Os03g16200NANA3+8910433..8910714hypothetical protein
LOC_Os03g16210Os.30077.1.S1_at11/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.2.S1_at8/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.3.S1_at5/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25105.1.S1_at--359--6391Chr03:8896150..8896174 (25 bp)
GATCGTGCACAAGAGGGACGGCCAC
LOC_Os03g16160
OsAffx.25105.1.S1_at--7--9031Chr03:8896145..8896169 (25 bp)
TGCACAAGAGGGACGGCCACCGCGC
LOC_Os03g16160
OsAffx.25105.1.S1_at--487--491Chr03:8896119..8896143 (25 bp)
ATCGGCAACCCGTTCCTGAACGACG
LOC_Os03g16160
OsAffx.25105.1.S1_at--659--4031Chr03:8896109..8896133 (25 bp)
CGTTCCTGAACGACGATCCGGCGGC
LOC_Os03g16160
OsAffx.25105.1.S1_at--624--2211Chr03:8896023..8896047 (25 bp)
ACAACCGTGGATGCGCCGTTTCTCG
LOC_Os03g16160
OsAffx.25105.1.S1_at--107--7591Chr03:8895788..8896019 (25 bp)
GGGCAGTAGTCACGCTTCTTGGTTT
LOC_Os03g16160
OsAffx.25105.1.S1_at--1106--6911Chr03:8895783..8896014 (25 bp)
GTAGTCACGCTTCTTGGTTTGGTCT
LOC_Os03g16160
OsAffx.25105.1.S1_at--213--2891Chr03:8895752..8895776 (25 bp)
AAGGGAAAATATACTGCGTGAAGGT
LOC_Os03g16160
OsAffx.25105.1.S1_at--951--1971Chr03:8895740..8895764 (25 bp)
ACTGCGTGAAGGTTGTTTACTGGCT
LOC_Os03g16160
OsAffx.25105.1.S1_at--1096--7911Chr03:8895706..8895730 (25 bp)
GGATTGCGCTCCATGTGCAACCGGC
LOC_Os03g16160
OsAffx.25105.1.S1_at--410--10651Chr03:8895703..8895727 (25 bp)
TTGCGCTCCATGTGCAACCGGCAAA
LOC_Os03g16160
Target Sequence 
GATCGTGCACAAGAGGGACGGCCACCGCGCCATCGGCAACCCGTTCCTGAACGACGATCCGGCGGCGGCGGCCACCGCGT
ACAAGAGGCTCGCCACCTGCGACTCCGGAACCTACTCCCGGCCCGCCACAACCGTGGATGCGCCGTTTCTCGGCGGGGCA
GTAGTCACGCTTCTTGGTTTGGTCTTTCCAAAAGGGAAAATATACTGCGTGAAGGTTGTTTACTGGCTTCTTTGTGGGGA
TTGCGCTCCATGTGCAACCGGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis