Browse Element(s) Details


OsAffx.25288.1.S1_s_at

Description tigr:9631.m02915
TID=OsAffx.25288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2986411/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29810Os.34521.1.S1_at11/113+16949262..16952730Clp protease family protein, expressed
LOC_Os03g29830Os.28409.4.S1_s_at11/113+16954199..16957297expressed protein
LOC_Os03g29830OsAffx.25286.1.S1_at10/113+16954199..16957297expressed protein
LOC_Os03g29840OsAffx.25287.1.S1_at11/113+16960984..16961997hypothetical protein
LOC_Os03g29850Os.15732.1.S1_s_at11/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.17065.1.S1_at8/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_x_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29864OsAffx.25288.1.S1_s_at11/113+16969392..16977744retrotransposon protein, putative, unclassified, expressed
LOC_Os03g29880Os.14919.1.S1_at4/113+16979721..16984701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29900OsAffx.29313.1.S1_at1/113+16986909..16990220transposon protein, putative, Mutator sub-class
LOC_Os03g29910Os.9725.1.S1_x_at11/113+16994292..16998909expressed protein
LOC_Os03g29920OsAffx.25289.1.S1_x_at11/113+17001913..17004167heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25288.1.S1_s_at--223--9191Chr03:16976515..16976539 (25 bp)
TGCCGGCGATGGAGACACCAGTGCT
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--78--5311Chr03:16976487..16976511 (25 bp)
GAAGGAATCTGTGCCGTACTTTGCT
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--163--9311Chr03:16976425..16976449 (25 bp)
TCCCTTTTCCATCTTTACTTATTCA
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--556--1971Chr03:16976386..16976410 (25 bp)
ACTGATCCCTTTCTTACATTGTGTT
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--445--8831Chr03:16976358..16976382 (25 bp)
TGATGCGAATTCCTTACTGTTTTTT
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--970--6571Chr03:16976260..16976284 (25 bp)
GATTCGATGCACTGTCGGCGGTCAG
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--1068--871Chr03:16976200..16976224 (25 bp)
AGGCCACTGCCTTCATGAGACATGC
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--501--9311Chr03:16976137..16976161 (25 bp)
TCCCTATCAGGCTTCAGGGCTTGAT
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--830--9631Chr03:16976124..16976148 (25 bp)
TCAGGGCTTGATCAGTTACTTTTTT
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--1054--3791Chr03:16976086..16976110 (25 bp)
CTCCCTATTAGGCTTGATGTCAATA
LOC_Os03g29864
OsAffx.25288.1.S1_s_at--1073--7071Chr03:16976068..16976092 (25 bp)
GTCAATACGTTTTGTAACTTGCTCA
LOC_Os03g29864
Target Sequence 
TGCCGGCGATGGAGACACCAGTGCTGGAGAAGGAATCTGTGCCGTACTTTGCTGGGCCGTCGTTCAACTTCGCACCACAT
CCGAGCGAACTCCCTTTTCCATCTTTACTTATTCACTTAATTCATTCTCACTGATCCCTTTCTTACATTGTGTTTTATGA
TGCGAATTCCTTACTGTTTTTTTACCTAACTAAGTGTCTTTATTCTATTTTCCTTAACAGGACGAACGTGGAGAGGTGAG
GACAAGATGAATGTTGATTCGATGCACTGTCGGCGGTCAGCTTACCCAGCAGTCACTGCCTCAGCTCAGCCATCCAGGCC
ACTGCCTTCATGAGACATGCTCCAACTAGAACATGTAGTTATTTGTTTTCTTCCCCTCTCCCTATCAGGCTTCAGGGCTT
GATCAGTTACTTTTTTTTCTTCTTCCTCCCTCCCTATTAGGCTTGATGTCAATACGTTTTGTAACTTGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25288.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis