Browse Element(s) Details


OsAffx.25492.1.S1_at

Description tigr:9638.m03038
TID=OsAffx.25492.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3449011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25492.1.S1_at--993--811Chr10:18073029..18073053 (25 bp)
ATGGTCCACATGGTGTTTTGCGCTT
LOC_Os10g34490
OsAffx.25492.1.S1_at--538--9211Chr10:18073033..18073057 (25 bp)
TCCACATGGTGTTTTGCGCTTCCCT
LOC_Os10g34490
OsAffx.25492.1.S1_at--942--8771Chr10:18073042..18073066 (25 bp)
TGTTTTGCGCTTCCCTCGCTGTGGT
LOC_Os10g34490
OsAffx.25492.1.S1_at--331--2673Chr10:18073552..18073576 (25 bp)
AAGCCGCGCCAGGTTCTTGATTGCG
LOC_Os10g34490
OsAffx.25492.1.S1_at--812--4213Chr10:18073555..18073579 (25 bp)
CCGCGCCAGGTTCTTGATTGCGAAA
LOC_Os10g34490
OsAffx.25492.1.S1_at--198--1012Chr10:18073562..18073586 (25 bp)
AGGTTCTTGATTGCGAAATCGCTCC
LOC_Os10g34490
OsAffx.25492.1.S1_at--955--10772Chr10:18073568..18073592 (25 bp)
TTGATTGCGAAATCGCTCCTCCATC
LOC_Os10g34490
OsAffx.25492.1.S1_at--309--571Chr10:18073590..18073614 (25 bp)
ATCCAACCGTGCGACCGAGTTTGGT
LOC_Os10g34490
OsAffx.25492.1.S1_at--307--9152Chr10:18073599..18073623 (25 bp)
TGCGACCGAGTTTGGTTCCACCGGA
LOC_Os10g34490
OsAffx.25492.1.S1_at--922--6051Chr10:18073606..18073630 (25 bp)
GAGTTTGGTTCCACCGGACTGCGCG
LOC_Os10g34490
OsAffx.25492.1.S1_at--643--6691Chr10:18073613..18073637 (25 bp)
GTTCCACCGGACTGCGCGTCGGCAT
LOC_Os10g34490
Target Sequence 
ATGGTCCACATGGTGTTTTGCGCTTCCCTCGCTGTGGTGCTCGTCCGCGTCCTCCGCGTTGTCGCCGAGCCGACGTCGCC
GCCCATGACGCCCAGCCTCTACGCCGCCTCCGTCGTGCCCATCGGGCGTGCTCTACGCGCTGTCGCTCTGGCGCTCATGC
CCGTCGTCGTCTACTGCCTCGCCATCGCGTTCCGCACCGACTCCTTCCACCACGCCTCCATGCTCAACATGCTCGGCATC
TCCGCGGGCATCGCCGTCGCCGCCTACGGCGAGGCGCGGTTCGACGCGTTCGGCGTCATGCTGCAGCTCGTCGCTGTCAC
CGCCGAAGCCACGCGGCTCGTGCTCATCCAGATACTGCTCACCGGCGCGACGCCCCCGCCGGCGCCGGCGCCGGTGCCGG
CGCAGGCCGACCGCAACGTGGAGATGGGCCTCCTCGGCGGCGAGAGCAGCGCGTCGCGGCCGGCGATGAAGCCGCGCCAG
GTTCTTGATTGCGAAATCGCTCCTCCATCCAACCGTGCGACCGAGTTTGGTTCCACCGGACTGCGCGTCGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis