Browse Element(s) Details


OsAffx.25503.1.S1_at

Description tigr:9631.m04130
TID=OsAffx.25503.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4289011/11hypothetical protein
LOC_Os07g055401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g124201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42840Os.9954.1.S1_at11/113+23843050..23849762Calcineurin B-like protein 3, putative, expressed
LOC_Os03g42850OsAffx.25502.2.S1_at11/113+23853150..23854173hypothetical protein
LOC_Os03g42860NANA3+23854442..23854834pentatricopeptide, putative
LOC_Os03g42870OsAffx.13313.1.S1_at11/113+23856174..23856485hypothetical protein
LOC_Os03g42880Os.27341.1.S1_at11/113+23861951..23867501expressed protein
LOC_Os03g42890OsAffx.25503.1.S1_at11/113+23869970..23871596hypothetical protein
LOC_Os03g42890OsAffx.5954.2.S1_at1/113+23869970..23871596hypothetical protein
LOC_Os03g42900Os.13727.1.S1_at11/113+23879913..23888496KH domain containing protein, expressed
LOC_Os03g42910OsAffx.25504.1.S1_at11/113+23891739..23892293hypothetical protein
LOC_Os03g42920OsAffx.25505.1.S1_x_at11/113+23892619..23893119hypothetical protein
LOC_Os03g42930OsAffx.24317.2.S1_x_at7/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.24317.5.S1_x_at2/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.30665.1.A1_x_at1/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.23379.1.S1_at1/113+23894330..23897354hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25503.1.S1_at--498--5171Chr03:23870572..23870596 (25 bp)
GCAAGAGTGCTTCTATCAAGAGAGT
LOC_Os03g42890
OsAffx.25503.1.S1_at--333--3311Chr03:23870614..23870702 (25 bp)
CACTTGAATATATCTTCGGTGGAAG
LOC_Os03g42890
OsAffx.25503.1.S1_at--617--5351Chr03:23870746..23870770 (25 bp)
GAAGAGTCAATGTTTTCCTACCTTG
LOC_Os03g42890
OsAffx.25503.1.S1_at--639--8231Chr03:23870779..23870803 (25 bp)
GGCACTTCACAAGACAACATAGTTT
LOC_Os03g42890
OsAffx.25503.1.S1_at--1000--2351Chr03:23871214..23871236 (23 bp)
AAAGCGCATGTCAAGATGGGAAACT
LOC_Os03g42890
OsAffx.25503.1.S1_at--234--5551Chr03:23871231..23871255 (25 bp)
GAAACTCTAATTGGAGCTCATCAGC
LOC_Os03g42890
OsAffx.25503.1.S1_at--318--5711Chr03:23871272..23871296 (25 bp)
GACTACCATAAGACCATTGGACCTT
LOC_Os03g42890
OsAffx.25503.1.S1_at--389--10851Chr03:23871288..23871312 (25 bp)
TTGGACCTTCTTAACATGGACCTTT
LOC_Os03g42890
OsAffx.25503.1.S1_at--993--2491Chr03:23871300..23871324 (25 bp)
AACATGGACCTTTTCGGACCCATTG
LOC_Os03g42890
OsAffx.25503.1.S1_at--271--3313Chr04:6838462..6838487 (25 bp)
CACATGGGTGTTCTTTTTCATGACA
LOC_Os04g12420
OsAffx.25503.1.S1_at--550--5511Chr03:23871512..23871536 (25 bp)
GAACAAGTGCGTGGAGAGTTTCCTT
LOC_Os03g42890
Target Sequence 
GCAAGAGTGCTTCTATCAAGAGAGTGCTTTGGGTGCCTAAGGCACTTGAATATATCTTCGGTGGAAGAAGTTGGGCGATT
GATAGTGGATGCACAAATCACATGATCGGAGAAGAGTCAATGTTTTCCTACCTTGATCCAAATGGCACTTCACAAGACAA
CATAGTTTTCGAGGATGATGGAAAGGAAAAGCGCATGTCAAGATGGGAAACTCTAATTGGAGCTCATCAGCCGGCCAAGA
ACGTGATGACTACCATAAGACCATTGGACCTTCTTAACATGGACCTTTTCGGACCCATTGCTTATCTAAGCAATGGAGGT
AACAAATATGGTCTTGCTATTGTTGATAACTTTTCATGCTTCACATGGGTGTTCTTTTTCATGACAAGAGCGAAACACAA
GCAAGTCAAGAAGTTTGCAAGAAGAGCACAAAATGAGTTCGAACTCAAGATCAAAAACATCCGAAACGACAACGGCAAAG
AGTTCAAGAACAAGTGCGTGGAGAGTTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis