Browse Element(s) Details


OsAffx.25725.2.S1_s_at

Description tigr:9631.m05439
TID=OsAffx.25725.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5573011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55690OsAffx.22940.5.S1_at11/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.1.S1_s_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.5.S1_x_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.3.S1_x_at5/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.18.S1_x_at4/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.2.S1_s_at3/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.38172.1.S1_x_at2/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.43567.1.S1_x_at1/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55704OsAffx.13497.1.S1_s_at11/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55704OsAffx.4992.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50196.2.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55720Os.12837.1.S1_at11/113+31664100..31664825cytochrome b6f complex subunit, putative, expressed
LOC_Os03g55730Os.11614.1.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.1.S1_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.1.S1_a_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.2.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.2.S1_x_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.38505.1.S1_x_at2/113+31664942..31671202expressed protein
LOC_Os03g55734Os.13536.1.S1_at11/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55734Os.11519.2.S1_x_at1/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55740NANA3+31674717..31675175prolamin, putative, expressed
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770Os.428.1.S1_at2/113+31694949..31695203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25725.2.S1_s_at--1154--9071Chr03:31666130..31666154 (25 bp)
TGCTTTGCTTCTGGCAACAATGCCA
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--300--3031Chr03:31666112..31666136 (25 bp)
AATGCCATCTATCACCAGGTTACTC
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--415--1011Chr03:31666096..31666120 (25 bp)
AGGTTACTCCTTTTTTATCAGCTCG
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--637--3791Chr03:31666075..31666099 (25 bp)
CTCGATCATGTGTTTATGTTCTTCT
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--586--751Chr03:31666044..31666068 (25 bp)
ATGTCCTGAAACACAACGTTTGACT
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--363--5531Chr03:31666014..31666038 (25 bp)
GAAACACAACGTTCCATACTTCCAT
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--1116--7891Chr03:31665989..31666013 (25 bp)
GGTTCCTCCAGCATATGTGTGTCAA
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--767--6531Chr03:31665958..31665982 (25 bp)
GATTTTCGATTAATGCCCCTTCTAA
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--1158--4431Chr03:31665944..31665968 (25 bp)
GCCCCTTCTAACCTTAACATCTAAT
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--305--9591Chr03:31665859..31665883 (25 bp)
TTTGGGTAACCCTCATTCTTCATCA
LOC_Os03g55730
OsAffx.25725.2.S1_s_at--1114--3831Chr03:31665817..31665841 (25 bp)
CTGAAACCTCCTTTTATCTTGCATA
LOC_Os03g55730
Target Sequence 
TGCTTTGCTTCTGGCAACAATGCCATCTATCACCAGGTTACTCCTTTTTTATCAGCTCGATCATGTGTTTATGTTCTTCT
AGAAAAATGTCCTGAAACACAACGTTTGACTACATTGAAACACAACGTTCCATACTTCCATGGTTCCTCCAGCATATGTG
TGTCAATCTAGAGATTTTCGATTAATGCCCCTTCTAACCTTAACATCTAATCAGCAAGAACTAGATATCCAGCTTATAAT
ATTTCTGACAGATCATTTTTTCAGTTCCAGTTTTGGGTAACCCTCATTCTTCATCATTTCTTAATTTGGCAATCTGAAAC
CTCCTTTTATCTTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25725.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis