Browse Element(s) Details


OsAffx.25793.1.S1_at

Description tigr:9631.m06124
TID=OsAffx.25793.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative harpin inducing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6202011/11Harpin-induced protein 1 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62050OsAffx.13577.1.S1_at11/113+35095123..35096236hypothetical protein
LOC_Os03g62060Os.10435.1.S1_at10/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62060Os.54455.1.S1_at1/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62070Os.19742.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62070Os.10435.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62080Os.52608.1.S1_at11/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62080OsAffx.22644.1.S1_at1/113+35107535..35113012mRNA decapping enzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25793.1.S1_at--1016--8311Chr03:35084793..35084817 (25 bp)
GGCTCGTACCGGAACCGCAGGTTCG
LOC_Os03g62020
OsAffx.25793.1.S1_at--472--9971Chr03:35084799..35084823 (25 bp)
TACCGGAACCGCAGGTTCGCGCTCG
LOC_Os03g62020
OsAffx.25793.1.S1_at--393--9331Chr03:35084815..35084839 (25 bp)
TCGCGCTCGGCTTCTGGTTCGGCCT
LOC_Os03g62020
OsAffx.25793.1.S1_at--604--9571Chr03:35085049..35085073 (25 bp)
TCTTCCACGGCAAGCGCTTCGACGG
LOC_Os03g62020
OsAffx.25793.1.S1_at--1076--4491Chr03:35085081..35085105 (25 bp)
GCCGTCGTCTCCTCGGGATACGAGC
LOC_Os03g62020
OsAffx.25793.1.S1_at--920--9491Chr03:35085088..35085112 (25 bp)
TCTCCTCGGGATACGAGCAGGCGGC
LOC_Os03g62020
OsAffx.25793.1.S1_at--240--951Chr03:35085114..35085138 (25 bp)
AGGAAGACGGAGGTGTTCCGCCTCT
LOC_Os03g62020
OsAffx.25793.1.S1_at--463--8031Chr03:35085188..35085212 (25 bp)
GGAGTACCGGAAGGAGAGCGACAAT
LOC_Os03g62020
OsAffx.25793.1.S1_at--6--1771Chr03:35085238..35085262 (25 bp)
ACCTGTCCGGCGAGGTGAAGTACGC
LOC_Os03g62020
OsAffx.25793.1.S1_at--784--9951Chr03:35085258..35085282 (25 bp)
TACGCGCTGCACAGCGCGTGGTGCA
LOC_Os03g62020
OsAffx.25793.1.S1_at--251--8551Chr03:35085286..35085310 (25 bp)
TGGAGGCCAGGTGCCCGCTCAAGCT
LOC_Os03g62020
Target Sequence 
GGCTCGTACCGGAACCGCAGGTTCGCGCTCGGCTTCTGGTTCGGCCTCGCCATCCTCGCCGCCATCGCCATCATCGTCGT
GCTCGCCGTCGGCTACGGCCGCGTCTCCAGCCTCAGGGTCGCCGTCGACGACGCCTCCCTGACGCGCTTCGCGGTGACCG
CCACCTCCGTCGCCTACAACCTCACCGTCGCGCTCGTCGTCCGCAACCCCAACTGGGCCATGGGCGTCACCTACCGCTCC
CTCGAGGCGTCCTACCTCTTCCACGGCAAGCGCTTCGACGGCGCCGCCGCCGTCGTCTCCTCGGGATACGAGCAGGCGGC
GAGGAAGACGGAGGTGTTCCGCCTCTCGTCCGGCTCCGACGCGGCGCCGGCCGCGCTGGGGAGCGGCGGCGAGAGGGAGT
ACCGGAAGGAGAGCGACAATGGCGGGGTGTTCGACGTCGAGGTGGACCTGTCCGGCGAGGTGAAGTACGCGCTGCACAGC
GCGTGGTGCAGGGTGGAGGCCAGGTGCCCGCTCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis