Browse Element(s) Details


OsAffx.25888.2.S1_x_at

Description tigr:9632.m00566
TID=OsAffx.25888.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0653011/11hypothetical protein
LOC_Os04g063407/11hypothetical protein
LOC_Os04g064904/11hypothetical protein
LOC_Os04g055002/11hypothetical protein
LOC_Os04g055501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06390NANA4+3371107..3372456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06380Os.45721.1.S1_x_at1/114+3373225..3375804retrotransposon protein, putative, unclassified
LOC_Os04g06429NANA4+3377737..3379721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06480NANA4+3381963..3383171retrotransposon protein, putative, unclassified
LOC_Os04g06490OsAffx.25888.1.S1_x_at11/114+3391756..3392774hypothetical protein
LOC_Os04g06490OsAffx.25888.2.S1_x_at4/114+3391756..3392774hypothetical protein
LOC_Os04g06490Os.51348.1.S1_x_at2/114+3391756..3392774hypothetical protein
LOC_Os04g06530OsAffx.25888.2.S1_x_at11/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.3727.1.S1_at2/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.25888.1.S1_x_at1/114+3394549..3395237hypothetical protein
LOC_Os04g06520Os.6075.1.S1_at11/114+3397874..3399582expressed protein
LOC_Os04g06520Os.6075.1.S2_at11/114+3397874..3399582expressed protein
LOC_Os04g06510OsAffx.25891.2.S1_at10/114+3404604..3406890hypothetical protein
LOC_Os04g06510Os.26930.1.S2_x_at1/114+3404604..3406890hypothetical protein
LOC_Os04g06500OsAffx.25892.1.S1_at11/114+3411608..3414314hypothetical protein
LOC_Os04g06500Os.26930.1.S2_x_at1/114+3411608..3414314hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25888.2.S1_x_at--1107--4175Chr04:3395161..3395185 (25 bp)
CCCTTCTAGGCTGTTTTAGCATTCT
LOC_Os04g06530
OsAffx.25888.2.S1_x_at--269--4951Chr04:3395143..3395167 (25 bp)
GCATTCTTGGCCACGTGTATGGTAA
LOC_Os04g06530
OsAffx.25888.2.S1_x_at--317--3355Chr04:2771199..2771453 (25 bp)
CACGTGTATGGTAATAATCTGGATT
NONE
OsAffx.25888.2.S1_x_at--192--493Chr04:3394886..3394910 (25 bp)
ATCTGGATTACACCAGGAGTGCCAC
LOC_Os04g06530
OsAffx.25888.2.S1_x_at--971--6093Chr04:3394870..3394894 (25 bp)
GAGTGCCACCATGAATGAAGGACGC
LOC_Os04g06530
OsAffx.25888.2.S1_x_at--948--2071Chr04:3394809..3394829 (21 bp)
ACATTTTCTGCCCATCGAAGGGGAA
LOC_Os04g06530
OsAffx.25888.2.S1_x_at--684--7612Chr04:3349618..3349642 (25 bp)
GGGAAAAGTATAACTGTCTTATTGA
NONE
OsAffx.25888.2.S1_x_at--796--2553Chr04:3349629..3349653 (25 bp)
AACTGTCTTATTGATACATAACTGG
NONE
OsAffx.25888.2.S1_x_at--1131--3855Chr04:3349631..3349655 (25 bp)
CTGTCTTATTGATACATAACTGGAG
NONE
OsAffx.25888.2.S1_x_at--312--54Chr04:3349638..3349662 (25 bp)
ATTGATACATAACTGGAGATGGCCA
NONE
OsAffx.25888.2.S1_x_at--816--6474Chr04:3349641..3349665 (25 bp)
GATACATAACTGGAGATGGCCACAG
NONE
Target Sequence 
CCCTTCTAGGCTGTTTTAGCATTCTTGGCCACGTGTATGGTAATAATCTGGATTACACCAGGAGTGCCACCATGAATGAA
GGACGCAACAATGTCAATATAAATGGTTTGGTACCCGTACCATGCAACATTTTCTGCCCATCGAAGGGGAAAAGTATAAC
TGTCTTATTGATACATAACTGGAGATGGCCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25888.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis