Browse Element(s) Details


OsAffx.26378.1.S1_at

Description tigr:9632.m03650
TID=OsAffx.26378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3866011/11amino acid transporter family protein, putative
LOC_Os08g319002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed
LOC_Os04g38630Os.6726.1.S1_x_at11/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38630Os.6726.2.S1_at10/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed
LOC_Os04g38710OsAffx.4017.1.S1_at10/114+22772385..22774486hypothetical protein
LOC_Os04g38720Os.15708.1.S1_a_at11/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38720Os.51926.1.S1_x_at1/114+22775498..22777550No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26378.1.S1_at--53--9371Chr04:22751202..22751226 (25 bp)
TCGACAAGCTCTTCCCAGGAGCCAG
LOC_Os04g38660
OsAffx.26378.1.S1_at--939--2691Chr04:22751207..22751231 (25 bp)
AAGCTCTTCCCAGGAGCCAGAGTCA
LOC_Os04g38660
OsAffx.26378.1.S1_at--903--10611Chr04:22751213..22751237 (25 bp)
TTCCCAGGAGCCAGAGTCACCCTGG
LOC_Os04g38660
OsAffx.26378.1.S1_at--649--9311Chr04:22751246..22751270 (25 bp)
TCCCTCGCCGGGAAGCGGCTGTTCG
LOC_Os04g38660
OsAffx.26378.1.S1_at--1091--9592Chr04:22751367..22751391 (25 bp)
TCATCGTGCTCAGCGTGCTGTGGGC
LOC_Os04g38660
OsAffx.26378.1.S1_at--698--9351Chr04:22751400..22751424 (25 bp)
TCGACGGCGTCGGATTCTCCGGACG
LOC_Os04g38660
OsAffx.26378.1.S1_at--621--9431Chr04:22751409..22751433 (25 bp)
TCGGATTCTCCGGACGAGGGACGAC
LOC_Os04g38660
OsAffx.26378.1.S1_at--97--12Chr04:22751413..22751437 (25 bp)
ATTCTCCGGACGAGGGACGACGACG
LOC_Os04g38660
OsAffx.26378.1.S1_at--490--9311Chr04:22751457..22751481 (25 bp)
TCCCGACGGCTCTCGGGCTGTACAT
LOC_Os04g38660
OsAffx.26378.1.S1_at--194--3991Chr04:22751470..22751494 (25 bp)
CGGGCTGTACATCTTCTGCTACGGG
LOC_Os04g38660
OsAffx.26378.1.S1_at--635--4231Chr04:22751510..22751534 (25 bp)
CCGACGCTCTACACATCTATGAAGA
LOC_Os04g38660
Target Sequence 
TCGACAAGCTCTTCCCAGGAGCCAGAGTCACCCTGGGGACGGTGTCCCTCGCCGGGAAGCGGCTGTTCGTCGTGCTCGTC
GCGCTCGTGGTGGCGCCCACGACGTGGCTGCGCAGCCTCGGCGTGCTCGCGTACGTCTCCGCCACGGGCGTGTTCGCGTC
CGTCGTCATCGTGCTCAGCGTGCTGTGGGCCGCGGCCGTCGACGGCGTCGGATTCTCCGGACGAGGGACGACGACGCCGC
TACGGATCGCGGGGCTCCCGACGGCTCTCGGGCTGTACATCTTCTGCTACGGGGGACACCCCATGTTCCCGACGCTCTAC
ACATCTATGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis