Browse Element(s) Details


OsAffx.26386.1.S1_at

Description tigr:9632.m03710
TID=OsAffx.26386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3920011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39220Os.19040.1.S1_at10/114+23099755..23107680expressed protein
LOC_Os04g39230Os.18755.1.S1_at11/114+23110763..23111945expressed protein
LOC_Os04g39240Os.22379.1.S1_at10/114+23112033..23117844expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26386.1.S1_at--920--2931Chr04:23093251..23093275 (25 bp)
AAGGCGGAGCCACAACACGTCTTGC
LOC_Os04g39200
OsAffx.26386.1.S1_at--1107--1631Chr04:23093190..23093214 (25 bp)
AGCGACGCCTTCCACTGACGAAGTG
LOC_Os04g39200
OsAffx.26386.1.S1_at--890--5911Chr04:23093152..23093176 (25 bp)
GAGCTTCAGCGTGGAGCGTTATCCC
LOC_Os04g39200
OsAffx.26386.1.S1_at--499--1611Chr04:23093138..23093162 (25 bp)
AGCGTTATCCCCATCTTACTTGACG
LOC_Os04g39200
OsAffx.26386.1.S1_at--77--8531Chr04:23093050..23093074 (25 bp)
TGGAACAACACCACCTTCGATGATT
LOC_Os04g39200
OsAffx.26386.1.S1_at--102--1751Chr04:23093038..23093062 (25 bp)
ACCTTCGATGATTCCATGTCTTCTA
LOC_Os04g39200
OsAffx.26386.1.S1_at--534--8731Chr04:23093022..23093046 (25 bp)
TGTCTTCTAGATCATCTTGGCTGCC
LOC_Os04g39200
OsAffx.26386.1.S1_at--20--7211Chr04:23092987..23093011 (25 bp)
GTCGTCACAGCTGTCCGCAAGGGCG
LOC_Os04g39200
OsAffx.26386.1.S1_at--860--8071Chr04:23092958..23092982 (25 bp)
GGAGCATCTCCGTCCCAAGGTTGAT
LOC_Os04g39200
OsAffx.26386.1.S1_at--736--3212Chr06:12553337..12553819 (25 bp)
CAAGGTTGATGTAGCCATCGGCTGC
NONE
OsAffx.26386.1.S1_at--1073--2091Chr04:23092917..23092941 (25 bp)
ACATCGATGTCGAGATTGGCCACAT
LOC_Os04g39200
Target Sequence 
AAGGCGGAGCCACAACACGTCTTGCCCTTGAGACGGTGGCGCGAAGCGAGGAGTGGTCTCCAGCGACGCCTTCCACTGAC
GAAGTGGAGCGATAACGACGAGCTTCAGCGTGGAGCGTTATCCCCATCTTACTTGACGCCCGACGCCTTCCACCAAGCCA
TCATAGACGAGGGGGACCTGCTCATCCCGCTGGTCTATGTCTGGAACAACACCACCTTCGATGATTCCATGTCTTCTAGA
TCATCTTGGCTGCCCCAATACCCCGTCGTCACAGCTGTCCGCAAGGGCGACAAGGAGCATCTCCGTCCCAAGGTTGATGT
AGCCATCGGCTGCGACATCGATGTCGAGATTGGCCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis