Browse Element(s) Details


OsAffx.26409.2.S1_at

Description tigr:9632.m03876
TID=OsAffx.26409.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4078011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40730Os.12839.1.S1_at10/114+23956532..23959881oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40750OsAffx.26408.1.S1_x_at9/114+23968824..23969632hypothetical protein
LOC_Os04g40750OsAffx.26408.1.S1_at8/114+23968824..23969632hypothetical protein
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein
LOC_Os04g40780OsAffx.26409.2.S1_at11/114+23980029..23981835F-box domain containing protein
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein
LOC_Os04g40800OsAffx.4040.1.S1_at11/114+23987154..23991019F-box domain containing protein
LOC_Os04g40810OsAffx.4041.1.S1_at11/114+23995012..23997246hypothetical protein
LOC_Os04g40820OsAffx.26410.1.S1_at11/114+24004372..24005437hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26409.2.S1_at--109--5611Chr04:23981017..23981041 (25 bp)
GACAATACTACGAGCCTTCAAGAAC
LOC_Os04g40780
OsAffx.26409.2.S1_at--170--6931Chr04:23980853..23980877 (25 bp)
GTATGGATTCAACTGGAGACCCCAA
LOC_Os04g40780
OsAffx.26409.2.S1_at--895--5211Chr04:23980806..23980830 (25 bp)
GAATTTGACGTTGGTGGATGTCCAC
LOC_Os04g40780
OsAffx.26409.2.S1_at--617--1791Chr04:23980783..23980807 (25 bp)
ACCGCATTCATCCAAACTGTGGCAT
LOC_Os04g40780
OsAffx.26409.2.S1_at--445--7531Chr04:23980765..23980789 (25 bp)
GTGGCATCAATTGGACGCTGTTTCT
LOC_Os04g40780
OsAffx.26409.2.S1_at--469--10051Chr04:23980398..23980734 (25 bp)
TAGTATTTCGGCAACGGACCATCTC
LOC_Os04g40780
OsAffx.26409.2.S1_at--715--3551Chr04:23980379..23980403 (25 bp)
CATCTCTGTGTACCCGTTGAGGAAG
LOC_Os04g40780
OsAffx.26409.2.S1_at--888--10491Chr04:23980295..23980319 (25 bp)
TTCAAGCACTCCAACCTAAGCAAGC
LOC_Os04g40780
OsAffx.26409.2.S1_at--754--10211Chr04:23980186..23980210 (25 bp)
TATTACTGCATGACGACTGGTGTGA
LOC_Os04g40780
OsAffx.26409.2.S1_at--950--4591Chr04:23980156..23980180 (25 bp)
GCGAGTCTTATTATCCAGTTGCACG
LOC_Os04g40780
OsAffx.26409.2.S1_at--584--2711Chr04:23980059..23980083 (25 bp)
AAGCATCCAGTTTTTTCACACATCC
LOC_Os04g40780
Target Sequence 
GACAATACTACGAGCCTTCAAGAACTGTGGTTGAACTTTGAAACCGAAAAGGTATGGATTCAACTGGAGACCCCAAAACA
TTTGGCTCCTTTTATGAGGAATTTGACGTTGGTGGATGTCCACCGCATTCATCCAAACTGTGGCATCAATTGGACGCTGT
TTCTTTTGGAAGCAGCACCTCTTTTGAAGATACTTAGTATTTCGGCAACGGACCATCTCTGTGTACCCGTTGAGGAAGAG
CTGATAAAGAGATTCGTGATCTGCAAGAAGAGCAATATAAACTGGGAACCATCTGATTTCAAGCACTCCAACCTAAGCAA
GCTCACCATCCATGGCTTTCAACCTAATAATATATTCATGGGGTACATAAGGCGGGTCATGAAAGCCGCAATGAATTTGG
AAGAAATATTACTGCATGACGACTGGTGTGAGGACTGCGAGTCTTATTATCCAGTTGCACGATATCCACAAACAAAAATA
GAGAGGGATTTGGTAAAGAAAGCCATAAATGAGGGAATAACATCACCTATCAAAAGCATCCAGTTTTTTCACACATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26409.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis