Browse Element(s) Details


OsAffx.26617.1.S1_at

Description tigr:9629.m05720
TID=OsAffx.26617.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5830010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein
LOC_Os01g58310Os.28798.1.S1_at11/111+34025976..34026530expressed protein
LOC_Os01g58310Os.42298.1.S1_x_at3/111+34025976..34026530expressed protein
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26617.1.S1_at--62--931NONE
AGGCACCACCGGATATACCACATCA
NONE
OsAffx.26617.1.S1_at--1149--4351Chr01:34023557..34023846 (25 bp)
CCACCGGATATACCACATCAGCAAA
LOC_Os01g58300
OsAffx.26617.1.S1_at--724--2091Chr01:34023543..34023567 (25 bp)
ACATCAGCAAAACCCGATAAAGACG
LOC_Os01g58300
OsAffx.26617.1.S1_at--1036--9831Chr01:34023526..34023550 (25 bp)
TAAAGACGACATTGCGACGAGGAGA
LOC_Os01g58300
OsAffx.26617.1.S1_at--789--1411Chr01:34023502..34023526 (25 bp)
AGAAATAGCCGCGTCAAGGCTCGCC
LOC_Os01g58300
OsAffx.26617.1.S1_at--233--9991Chr01:34023497..34023521 (25 bp)
TAGCCGCGTCAAGGCTCGCCTGGGA
LOC_Os01g58300
OsAffx.26617.1.S1_at--666--9331Chr01:34023482..34023506 (25 bp)
TCGCCTGGGACGAAGGCACGAAGCT
LOC_Os01g58300
OsAffx.26617.1.S1_at--377--8251Chr01:34023468..34023492 (25 bp)
GGCACGAAGCTTCTATTAGTCCAGA
LOC_Os01g58300
OsAffx.26617.1.S1_at--427--4911Chr01:34023460..34023484 (25 bp)
GCTTCTATTAGTCCAGATTCCGCTG
LOC_Os01g58300
OsAffx.26617.1.S1_at--931--10191Chr01:34023455..34023479 (25 bp)
TATTAGTCCAGATTCCGCTGAGGCC
LOC_Os01g58300
OsAffx.26617.1.S1_at--76--4751Chr01:34023439..34023463 (25 bp)
GCTGAGGCCCACTTGCGGAAACGGC
LOC_Os01g58300
Target Sequence 
AGGCACCACCGGATATACCACATCAGCAAAACCCGATAAAGACGACATTGCGACGAGGAGAGAAATAGCCGCGTCAAGGC
TCGCCTGGGACGAAGGCACGAAGCTTCTATTAGTCCAGATTCCGCTGAGGCCCACTTGCGGAAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis