Browse Element(s) Details


OsAffx.26634.1.S1_s_at

Description tigr:9632.m05510
TID=OsAffx.26634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5654011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed
LOC_Os04g56520Os.5032.1.S1_at10/114+33485810..33488270Reversibly glycosylated polypeptide family protein, expressed
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26634.1.S1_s_at--203--91Chr04:33502711..33502735 (25 bp)
ATTCCATTTGACCTTGGTTATTACA
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--436--10471Chr04:33502704..33502728 (25 bp)
TTGACCTTGGTTATTACAGCAACGG
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--848--11Chr04:33502699..33502723 (25 bp)
CTTGGTTATTACAGCAACGGTTTGC
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--657--3411Chr04:33502688..33502712 (25 bp)
CAGCAACGGTTTGCTGTTGGATGAT
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--1103--6291Chr04:33502037..33502424 (25 bp)
GATGATGTGGGCAATCGTCTATCTT
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--1054--7471Chr04:33502031..33502055 (25 bp)
GTGGGCAATCGTCTATCTTGCGCAG
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--705--3051Chr04:33502025..33502049 (25 bp)
AATCGTCTATCTTGCGCAGCTGAAG
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--698--10151Chr04:33502018..33502042 (25 bp)
TATCTTGCGCAGCTGAAGCCACTGA
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--1085--10691Chr04:33502014..33502038 (25 bp)
TTGCGCAGCTGAAGCCACTGATCAA
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--130--1611Chr04:33502008..33502032 (25 bp)
AGCTGAAGCCACTGATCAACCCTAT
LOC_Os04g56540
OsAffx.26634.1.S1_s_at--1055--351Chr04:33501994..33502018 (25 bp)
ATCAACCCTATCCTAAGCGGCGAGT
LOC_Os04g56540
Target Sequence 
ATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGC
CACTGATCAACCCTATCCTAAGCGGCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26634.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis