Browse Element(s) Details


OsAffx.27015.1.S1_at

Description tigr:9633.m04838
TID=OsAffx.27015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5130011/11AC transposase, putative
LOC_Os05g2580010/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51270OsAffx.4682.1.S1_at10/115+29328611..29329884hypothetical protein
LOC_Os05g51280Os.26886.6.S1_s_at11/115+29330993..29334109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51280Os.26886.2.S1_s_at9/115+29330993..29334109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51280OsAffx.16467.1.S1_at7/115+29330993..29334109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51280OsAffx.3425.1.S1_at1/115+29330993..29334109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51290Os.26886.1.S1_x_at7/115+29336934..29340237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51290Os.26886.3.S1_x_at5/115+29336934..29340237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51290OsAffx.16244.1.S1_x_at1/115+29336934..29340237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51300OsAffx.27015.1.S1_at11/115+29344790..29347421AC transposase, putative
LOC_Os05g51300OsAffx.27015.1.S1_x_at11/115+29344790..29347421AC transposase, putative
LOC_Os05g51300Os.53746.1.S1_x_at1/115+29344790..29347421AC transposase, putative
LOC_Os05g51310NANA5+29349319..29352505retrotransposon protein, putative, unclassified
LOC_Os05g51320OsAffx.20387.1.S1_x_at3/115+29352960..29356729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51330NANA5+29357492..29360518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51340Os.26455.2.S1_s_at11/115+29362102..29363633hypothetical protein
LOC_Os05g51340OsAffx.15191.1.S1_at10/115+29362102..29363633hypothetical protein
LOC_Os05g51340OsAffx.32331.1.S1_x_at1/115+29362102..29363633hypothetical protein
LOC_Os05g51350OsAffx.15192.1.S1_at11/115+29365917..29367278Eukaryotic aspartyl protease family protein
LOC_Os05g51360Os.50191.1.S1_at10/115+29372287..29373866dnaK protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27015.1.S1_at--613--7732Chr05:14940223..14940246 (24 bp)
GGTGATTTGCTTCAGGTTAAGTTTG
LOC_Os05g25800
OsAffx.27015.1.S1_at--1088--7871Chr05:29345546..29345570 (25 bp)
GGTTAAGTTTGATGAATTTCTCTCT
LOC_Os05g51300
OsAffx.27015.1.S1_at--1004--5212Chr05:14940262..14940282 (21 bp)
GAATTTCTCTCTACCATAATGACCA
LOC_Os05g25800
OsAffx.27015.1.S1_at--594--10552Chr05:14940262..14940286 (25 bp)
TTCTCTCTACCATAATGACCATGTA
LOC_Os05g25800
OsAffx.27015.1.S1_at--320--9532Chr05:14940267..14940291 (25 bp)
TCTACCATAATGACCATGTATGATT
LOC_Os05g25800
OsAffx.27015.1.S1_at--432--752Chr05:14940282..14940306 (25 bp)
ATGTATGATTTTTATGTTGCTGCTG
LOC_Os05g25800
OsAffx.27015.1.S1_at--865--2252Chr05:14940317..14940341 (25 bp)
AAATAGTAATGCACCTCAATCTAGC
LOC_Os05g25800
OsAffx.27015.1.S1_at--82--7072Chr05:14940322..14940346 (25 bp)
GTAATGCACCTCAATCTAGCAATGA
LOC_Os05g25800
OsAffx.27015.1.S1_at--77--5092Chr05:14940327..14940351 (25 bp)
GCACCTCAATCTAGCAATGAACCAG
LOC_Os05g25800
OsAffx.27015.1.S1_at--141--3072Chr05:14940334..14940358 (25 bp)
AATCTAGCAATGAACCAGCTGTAGA
LOC_Os05g25800
OsAffx.27015.1.S1_at--896--10012Chr05:14940338..14940362 (25 bp)
TAGCAATGAACCAGCTGTAGAAGAA
LOC_Os05g25800
Target Sequence 
GGTGATTTGCTTCAGGTTAAGTTTGATGAATTTCTCTCTACCATAATGACCATGTATGATTTTTATGTTGCTGCTGCACC
CCCTCCAAATAGTAATGCACCTCAATCTAGCAATGAACCAGCTGTAGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis