Browse Element(s) Details


OsAffx.27015.2.S1_x_at

Description tigr:9633.m02325
TID=OsAffx.27015.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2580011/11hAT family dimerisation domain containing protein
LOC_Os06g390902/11transposon protein, putative, unclassified
LOC_Os09g118401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25770Os.37565.1.S1_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25770Os.37565.2.S1_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25770Os.37565.1.S1_x_at11/115+14913495..14915716WRKY DNA binding domain containing protein, expressed
LOC_Os05g25780Os.27075.1.S1_at11/115+14919775..14922684rhodanese-like domain-containing protein, putative, expressed
LOC_Os05g25790OsAffx.24317.5.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.6.S1_x_at3/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25790OsAffx.24317.3.S1_at1/115+14928597..14937717transposon protein, putative, unclassified
LOC_Os05g25800OsAffx.27015.2.S1_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.2.S1_x_at11/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_at10/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.27015.1.S1_x_at9/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.3.S1_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800Os.53746.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.24317.5.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25800OsAffx.31512.1.S1_x_at1/115+14938386..14942921hAT family dimerisation domain containing protein
LOC_Os05g25810OsAffx.27016.1.S1_at10/115+14946952..14948280hypothetical protein
LOC_Os05g25820NANA5+14952402..14953457retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25830OsAffx.4431.1.S1_x_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25830OsAffx.4431.1.S1_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27015.2.S1_x_at--806--4091Chr05:14942359..14942383 (25 bp)
CGACGGCGGCTAGGTTGATGTCCAC
LOC_Os05g25800
OsAffx.27015.2.S1_x_at--1134--3931Chr05:14942365..14942389 (25 bp)
CGGCTAGGTTGATGTCCACGGAGAA
LOC_Os05g25800
OsAffx.27015.2.S1_x_at--1110--4511Chr05:14942418..14942442 (25 bp)
GCCGCGACGACGGTTTTGTCAATGG
LOC_Os05g25800
OsAffx.27015.2.S1_x_at--467--5771Chr05:14942423..14942447 (25 bp)
GACGACGGTTTTGTCAATGGCGACA
LOC_Os05g25800
OsAffx.27015.2.S1_x_at--215--3971Chr05:14942428..14942452 (25 bp)
CGGTTTTGTCAATGGCGACAGCGGT
LOC_Os05g25800
OsAffx.27015.2.S1_x_at--931--8374Chr05:14942513..14942537 (25 bp)
GGCGACGCGGCGAAGAGGGCTCATC
LOC_Os05g25800
OsAffx.27015.2.S1_x_at--542--9611Chr05:14942533..14942557 (25 bp)
TCATCGCGAGCCATCGGAGACGGGT
LOC_Os05g25800
OsAffx.27015.2.S1_x_at--876--8352Chr09:5891718..5891820 (24 bp)
GGCGGCTACATGACGCGACTCGCTG
NONE
OsAffx.27015.2.S1_x_at--1045--9872Chr05:14942569..14942593 (25 bp)
TACATGACGCGACTCGCTGGAGAAG
LOC_Os05g25800
OsAffx.27015.2.S1_x_at--146--9691Chr05:14942627..14942651 (25 bp)
TCACAAGCCGGCGTGGAGACGCGGG
LOC_Os05g25800
OsAffx.27015.2.S1_x_at--428--3616Chr09:13807430..13807454 (25 bp)
CTTCGACGGAGGGAAGCCGCCGATA
NONE
Target Sequence 
CGACGGCGGCTAGGTTGATGTCCACGGAGAAGGGGGTGGAGGATGATGGGGAGGGGAGAGCCGCGACGACGGTTTTGTCA
ATGGCGACAGCGGTGGAGTGGAGAATGGGGCGGCGGTCCATGGGGAGGAGGACGTGGCGGCGGTGGCGGGGGGAGGCGAC
GCGGCGAAGAGGGCTCATCGCGAGCCATCGGAGACGGGTGGAGGGGCGGCTACATGACGCGACTCGCTGGAGAAGGGGGC
GGGGGAGGAGGACGGCGACGGAGGGGGCTCACAAGCCGGCGTGGAGACGCGGGCGGAGGAGAATGCGGCGAGGACGACGA
GGAAGGCTTCGACGGAGGGAAGCCGCCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27015.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis