Browse Element(s) Details


OsAffx.27056.1.S1_at

Description tigr:9633.m02580
TID=OsAffx.27056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2822011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28190Os.4776.1.S1_at11/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28190Os.18091.1.S1_at1/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28200Os.11399.1.S1_at11/115+16433932..16439703chlorophyll synthase, ChlG family protein, expressed
LOC_Os05g28200Os.49613.1.S1_at1/115+16433932..16439703chlorophyll synthase, ChlG family protein, expressed
LOC_Os05g28210Os.12812.1.S1_at1/115+16440849..16441243Embryonic abundant protein 1, putative
LOC_Os05g28220OsAffx.27056.1.S1_at11/115+16450431..16451276hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_at2/115+16459608..16460894hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_x_at1/115+16459608..16460894hypothetical protein
LOC_Os05g28250OsAffx.12179.1.S1_at2/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28250OsAffx.12179.1.S1_x_at1/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28260OsAffx.4452.1.S1_at10/115+16465997..16468463hypothetical protein
LOC_Os05g28270OsAffx.4453.1.S1_at11/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.2.S1_x_at2/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.1.S1_at1/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28280Os.1378.1.S1_at11/115+16474078..16477646DNA-binding protein, 42 kDa containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27056.1.S1_at--109--771Chr05:16450463..16450487 (25 bp)
ATGTCATCAACAATTTCGACCAGGG
LOC_Os05g28220
OsAffx.27056.1.S1_at--759--2051Chr05:16450495..16450519 (25 bp)
ACTTCATCAGCACCGTGGACGTCGC
LOC_Os05g28220
OsAffx.27056.1.S1_at--1156--4411Chr05:16450521..16450545 (25 bp)
GCCAGTCGCCTTATTCAACAACAAT
LOC_Os05g28220
OsAffx.27056.1.S1_at--69--3093Chr07:9380246..9380270 (25 bp)
AATCACACATGCATAACTCTCCGAG
NONE
OsAffx.27056.1.S1_at--345--4411Chr05:16450579..16450603 (25 bp)
GCCACTGGACCTTTGCAATTTTTGT
LOC_Os05g28220
OsAffx.27056.1.S1_at--766--8771Chr05:16450601..16450625 (25 bp)
TGTTTGCCACGATGATCTGCACCTA
LOC_Os05g28220
OsAffx.27056.1.S1_at--348--5811Chr05:16450636..16450660 (25 bp)
GACGCGCACACACAGGCGGAGATTT
LOC_Os05g28220
OsAffx.27056.1.S1_at--240--911Chr05:16450649..16450673 (25 bp)
AGGCGGAGATTTTGCCCTCTTGGGT
LOC_Os05g28220
OsAffx.27056.1.S1_at--54--4551Chr05:16450662..16450686 (25 bp)
GCCCTCTTGGGTAGTTTCATCTCTT
LOC_Os05g28220
OsAffx.27056.1.S1_at--551--9471Chr05:16450686..16450710 (25 bp)
TCTGTCCAGATCAATTGCGCCAAAC
LOC_Os05g28220
OsAffx.27056.1.S1_at--996--1771Chr05:16450709..16450733 (25 bp)
ACCCGACGCCATGCAATTTTTTGAG
LOC_Os05g28220
Target Sequence 
ATGTCATCAACAATTTCGACCAGGGGGCCTCCACTTCATCAGCACCGTGGACGTCGCCGCCAGTCGCCTTATTCAACAAC
AATCACACATGCATAACTCTCCGAGCGCTGGTCACGGCCACTGGACCTTTGCAATTTTTGTTTGCCACGATGATCTGCAC
CTACCACGGCCTCGACGCGCACACACAGGCGGAGATTTTGCCCTCTTGGGTAGTTTCATCTCTTCTGTCCAGATCAATTG
CGCCAAACCCGACGCCATGCAATTTTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis