Browse Element(s) Details


OsAffx.27062.1.S1_at

Description tigr:9633.m02602
TID=OsAffx.27062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2847011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28420Os.26886.1.S1_x_at6/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420Os.26886.3.S1_x_at5/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420OsAffx.16244.1.S1_x_at1/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.6.S1_s_at9/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430OsAffx.16467.1.S1_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.2.S1_s_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28440OsAffx.4457.1.S1_at11/115+16569663..16571723hypothetical protein
LOC_Os05g28450NANA5+16578296..16578727hypothetical protein
LOC_Os05g28460OsAffx.27061.1.S1_at11/115+16581844..16583357expressed protein
LOC_Os05g28470OsAffx.27062.1.S1_at11/115+16584115..16590366hypothetical protein
LOC_Os05g28470Os.22914.1.A1_at10/115+16584115..16590366hypothetical protein
LOC_Os05g28480Os.25494.1.S1_at6/115+16591887..16594358hypothetical protein
LOC_Os05g28490OsAffx.28933.1.S1_x_at5/115+16599513..16600388hypothetical protein
LOC_Os05g28490OsAffx.28933.2.S1_x_at1/115+16599513..16600388hypothetical protein
LOC_Os05g28500Os.14274.1.S1_at9/115+16606063..16610081ubiquitin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27062.1.S1_at--945--6411Chr05:16589822..16589846 (25 bp)
GATCTCGTGGGTGGCTGCGCTCCTC
LOC_Os05g28470
OsAffx.27062.1.S1_at--438--3911Chr05:16589848..16589872 (25 bp)
CTGGACAGGCTCTCCGGCAGCTGGA
LOC_Os05g28470
OsAffx.27062.1.S1_at--647--8531Chr05:16589950..16589974 (25 bp)
TGGAGCCCTGGCACTGGCAGCACGA
LOC_Os05g28470
OsAffx.27062.1.S1_at--902--4571Chr05:16589996..16590020 (25 bp)
GCGCTGACTCGCGTGGCGTTCAGAC
LOC_Os05g28470
OsAffx.27062.1.S1_at--330--9111Chr05:16590050..16590074 (25 bp)
TGCTGCCTCTCGCTGATGAAGAGGT
LOC_Os05g28470
OsAffx.27062.1.S1_at--900--1791Chr05:16590178..16590202 (25 bp)
ACCGCAATGGAGCTACCAGTGTCCT
LOC_Os05g28470
OsAffx.27062.1.S1_at--1012--1931Chr05:16590214..16590238 (25 bp)
ACGGCAGCTGGGAGCACCGACTCGT
LOC_Os05g28470
OsAffx.27062.1.S1_at--549--10771Chr05:16590265..16590289 (25 bp)
TTGAGGGTGTCGGAGCCGCAACCAC
LOC_Os05g28470
OsAffx.27062.1.S1_at--738--5871Chr05:16590277..16590301 (25 bp)
GAGCCGCAACCACGAGAGAGACCAT
LOC_Os05g28470
OsAffx.27062.1.S1_at--675--5991Chr05:16590290..16590314 (25 bp)
GAGAGAGACCATCGGTGCTCGACTA
LOC_Os05g28470
OsAffx.27062.1.S1_at--1084--4791Chr05:16590306..16590330 (25 bp)
GCTCGACTACGCCAGATGGGTGTTC
LOC_Os05g28470
Target Sequence 
GATCTCGTGGGTGGCTGCGCTCCTCGCTGGACAGGCTCTCCGGCAGCTGGAGGGCGTGCTCCGGCAGCCGCGCCGTCGCA
GCGGTGGCGGCGCCGGGGTGCTCCTCGTCGCGCCGCACCACCGGAAGCTGGAGCCCTGGCACTGGCAGCACGAGCGGCCG
CCACCTCCACCTCGGCGCTGACTCGCGTGGCGTTCAGACGGAGGTGCAGCTGCAGCTGCAGCTGCCGGTGCTGCCTCTCG
CTGATGAAGAGGTGGCTGCAGCCGACGATGATGCTGGGGGATCTCGCGGCTGGCTCCGCTCTTCTCTGGCCACACTCTCT
GGGAGCTGGGCCGTGTTCCCCACCACCAGCCGCTCCACCGCAATGGAGCTACCAGTGTCCTCCTCGCGGCGCACGGCAGC
TGGGAGCACCGACTCGTGGTCGGGGAGCTGGGATCCTGAGGCGTTGAGGGTGTCGGAGCCGCAACCACGAGAGAGACCAT
CGGTGCTCGACTACGCCAGATGGGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis