Browse Element(s) Details


OsAffx.27236.1.S1_at

Description tigr:9633.m03662
TID=OsAffx.27236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3937010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39320Os.4683.3.S1_at11/115+22982341..22985148Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os05g39330NANA5+22985889..22991180retrotransposon protein, putative, unclassified
LOC_Os05g39340Os.56256.1.S1_at11/115+22995478..22997336retrotransposon protein, putative, unclassified, expressed
LOC_Os05g39350Os.23209.1.S1_at11/115+22997685..23000566expressed protein
LOC_Os05g39360OsAffx.10756.1.S1_x_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39360OsAffx.8513.1.S1_s_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39370OsAffx.27236.1.S1_at10/115+23006311..23012400hypothetical protein
LOC_Os05g39370OsAffx.28164.2.S1_at1/115+23006311..23012400hypothetical protein
LOC_Os05g39380Os.7336.1.A1_at11/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.30538.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39390Os.4611.1.S1_at10/115+23021011..23026678outer membrane protein, OMP85 family protein, expressed
LOC_Os05g39400OsAffx.15024.1.S1_at11/115+23028111..23029574expressed protein
LOC_Os05g39410Os.17718.1.S1_at11/115+23029707..23033996Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27236.1.S1_at--499--2331Chr05:23010952..23010976 (25 bp)
AAAGAGTGCGCACTGCATCATCAGA
LOC_Os05g39370
OsAffx.27236.1.S1_at--553--1951Chr05:23011139..23011163 (25 bp)
ACTGGCATGGCTATCAAGGACTACA
LOC_Os05g39370
OsAffx.27236.1.S1_at--969--9871Chr05:23011160..23011184 (25 bp)
TACATCTACCTTTACTATCCCATTT
LOC_Os05g39370
OsAffx.27236.1.S1_at--769--2031NONE
ACTATCCCATTTTCAGGCCTGATAT
NONE
OsAffx.27236.1.S1_at--241--2571Chr05:23012048..23012072 (25 bp)
AACTGTGGGAGTTTGCTTGGCGCAA
LOC_Os05g39370
OsAffx.27236.1.S1_at--1130--6271Chr05:23012093..23012117 (25 bp)
GATGTTTTGCATGCCATAAGGTCTT
LOC_Os05g39370
OsAffx.27236.1.S1_at--410--6511Chr05:23012173..23012197 (25 bp)
GATATCACTGCTTGTCCAGCTGTAA
LOC_Os05g39370
OsAffx.27236.1.S1_at--265--3491Chr05:23012246..23012270 (25 bp)
CAGGCAGGCTCTCCCGTAAGATAGA
LOC_Os05g39370
OsAffx.27236.1.S1_at--223--5871Chr05:23012283..23012307 (25 bp)
GAGCCGCGACACTCAAAGTACTGGA
LOC_Os05g39370
OsAffx.27236.1.S1_at--771--691Chr05:23012309..23012333 (25 bp)
ATGAGCATCCCTCTCCAGATGGAGA
LOC_Os05g39370
OsAffx.27236.1.S1_at--1053--971Chr05:23012346..23012370 (25 bp)
AGGAGACGGATGCACAGACTCTGCT
LOC_Os05g39370
Target Sequence 
AAAGAGTGCGCACTGCATCATCAGATCTCAAAGTTCTTATCAGCAATCGAACTGCAGCAGTGAATAATGATGTTGATACT
GGCATGGCTATCAAGGACTACATCTACCTTTACTATCCCATTTTCAGGCCTGATATTCGGAAGAGAAACTTTGGGAGAAA
ACCCCACGAACTGTGGGAGTTTGCTTGGCGCAAGAGTACAGTTTCAGGCTTCAGATGTTTTGCATGCCATAAGGTCTTTA
AGCATAAGAAACTCACCATGATTGAGTCACACTTGAAGGGGGATAGAACAGATGATATCACTGCTTGTCCAGCTGTAACG
GAGAATGTCCTCTCCCGCCTCCAGCTCGCCCTGGATACTGGAGCAGCAGGCAGGCTCTCCCGTAAGATAGAAAGAGGAAG
GATGAGCCGCGACACTCAAAGTACTGGAGATGAGCATCCCTCTCCAGATGGAGAAGAAGATGGTAGAGGAGACGGATGCA
CAGACTCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis