Browse Element(s) Details


OsAffx.27354.1.S1_at

Description tigr:9633.m04434
TID=OsAffx.27354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4762011/11hypothetical protein
LOC_Os01g227801/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47580Os.51913.1.S1_at11/115+27178372..27179722expressed protein
LOC_Os05g47590OsAffx.4645.1.S1_at11/115+27181198..27182611hypothetical protein
LOC_Os05g47600NANA5+27188088..27188718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610Os.43567.1.S1_x_at4/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_at2/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.3.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47620OsAffx.27354.1.S1_at11/115+27202157..27203310hypothetical protein
LOC_Os05g47630Os.7968.1.S1_at4/115+27203909..27206342peptidyl-tRNA hydrolase family protein, expressed
LOC_Os05g47640Os.9175.1.S1_at11/115+27207287..27209237Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os05g47650OsAffx.15137.1.S1_at11/115+27219714..27221293DNA-binding protein RAV1, putative, expressed
LOC_Os05g47660OsAffx.15138.1.S1_at11/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_x_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.26910.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27354.1.S1_at--150--9831Chr05:27202730..27202754 (25 bp)
TAAACGGCGGTAGCGACGACAACAA
LOC_Os05g47620
OsAffx.27354.1.S1_at--338--1851Chr05:27202745..27202769 (25 bp)
ACGACAACAATGGTGCAGCTGGCAT
LOC_Os05g47620
OsAffx.27354.1.S1_at--319--5071Chr05:27202759..27202783 (25 bp)
GCAGCTGGCATGGTAAACAACGATA
LOC_Os05g47620
OsAffx.27354.1.S1_at--149--1131Chr05:27202785..27202809 (25 bp)
AGTGCTCGTGAATAATCCACCTTAT
LOC_Os05g47620
OsAffx.27354.1.S1_at--688--10431Chr05:27202806..27202830 (25 bp)
TTATCCGTGGGCTACCAACAGAGTG
LOC_Os05g47620
OsAffx.27354.1.S1_at--783--9091Chr05:27202906..27202930 (25 bp)
TGCGACGTACGCAAGGAGTTCGTTT
LOC_Os05g47620
OsAffx.27354.1.S1_at--307--1351Chr05:27202953..27202977 (25 bp)
AGAGTTGGAAGATTATCTCCGCCGA
LOC_Os05g47620
OsAffx.27354.1.S1_at--235--3811Chr05:27202969..27202993 (25 bp)
CTCCGCCGAAACTGCATGAGCATGA
LOC_Os05g47620
OsAffx.27354.1.S1_at--803--691Chr05:27202984..27203008 (25 bp)
ATGAGCATGAATGACCGTGCATCAG
LOC_Os05g47620
OsAffx.27354.1.S1_at--876--4371Chr05:27203052..27203076 (25 bp)
CCAACAGAACTGCATGCGTCCGGTG
LOC_Os05g47620
OsAffx.27354.1.S1_at--746--7332Chr05:27203139..27203163 (25 bp)
GTGCACGCTTGATCAACTCAAGTTT
LOC_Os05g47620
Target Sequence 
TAAACGGCGGTAGCGACGACAACAATGGTGCAGCTGGCATGGTAAACAACGATAGAGTGCTCGTGAATAATCCACCTTAT
CCGTGGGCTACCAACAGAGTGGCCGTACACCACTCTCTCGTCGAGCTGTCTCGCCGTGGCATCTTCACCATCAAAGGTGA
GGCTCGGTGCAGGCGCTGCGACGTACGCAAGGAGTTCGTTTACGATATTGAGGCCAAGTTTCGAGAGTTGGAAGATTATC
TCCGCCGAAACTGCATGAGCATGAATGACCGTGCATCAGAGAGGTGGAAGAACCCCATCGTACCCAACTGCGACGGCTGC
GGCCAACAGAACTGCATGCGTCCGGTGATCGCCGCTGAGAAGGAGCGCATCAACTGGTTGTTCCTGCTGCTTGGAGAGAC
GTTGGGTTTGTGCACGCTTGATCAACTCAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis