Browse Element(s) Details

OsAffx.27460.1.S1_at

Description

tigr:9634.m00425
TID=OsAffx.27460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05060	11/11	early flowering 3, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05010	OsAffx.27459.3.S1_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_x_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	Os.38638.3.S1_x_at	5/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.4.S1_s_at	11/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.3.S1_x_at	4/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05030	Os.31312.5.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05030	Os.31312.2.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05040	NA	NA	6	+	2221262..2227416	retrotransposon protein, putative, unclassified
LOC_Os06g05050	NA	NA	6	+	2228103..2232268	Protein kinase domain containing protein, expressed
LOC_Os06g05060	OsAffx.27460.1.S1_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_s_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_at	6/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05070	Os.3581.1.A1_at	10/11	6	+	2240347..2242213	Protein kinase domain containing protein, expressed
LOC_Os06g05080	Os.8006.1.S1_at	11/11	6	+	2242766..2245729	Cytochrome c oxidase subunit Vb family protein, expressed
LOC_Os06g05090	Os.3582.1.S1_at	8/11	6	+	2246874..2249858	protein arginine N-methyltransferase family protein, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_x_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05110	Os.3583.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110	OsAffx.4726.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120	OsAffx.15270.1.S1_at	9/11	6	+	2261968..2262878	hypothetical protein
LOC_Os06g05120	Os.46584.1.S1_x_at	2/11	6	+	2261968..2262878	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0007623	biological_process	circadian rhythm
GO:0009409	biological_process	response to cold
GO:0009585	biological_process	red, far-red light phototransduction
GO:0009733	biological_process	response to auxin stimulus
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009826	biological_process	unidimensional cell growth
GO:0009909	biological_process	regulation of flower development
GO:0010031	biological_process	circumnutation
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	transcription factor activity
GO:0008022	molecular_function	protein C-terminus binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27460.1.S1_at--104--1015	1	Chr06:2233651..2233675 (25 bp)	TATCAAGGTTGTTCCACATAATTCA	LOC_Os06g05060
OsAffx.27460.1.S1_at--270--37	1	Chr06:2233650..2233674 (25 bp)	ATCAAGGTTGTTCCACATAATTCAC	LOC_Os06g05060
OsAffx.27460.1.S1_at--1155--969	1	Chr06:2233649..2233673 (25 bp)	TCAAGGTTGTTCCACATAATTCACG	LOC_Os06g05060
OsAffx.27460.1.S1_at--1028--319	1	Chr06:2233648..2233672 (25 bp)	CAAGGTTGTTCCACATAATTCACGA	LOC_Os06g05060
OsAffx.27460.1.S1_at--117--289	1	Chr06:2233647..2233671 (25 bp)	AAGGTTGTTCCACATAATTCACGAA	LOC_Os06g05060
OsAffx.27460.1.S1_at--767--99	1	Chr06:2233646..2233670 (25 bp)	AGGTTGTTCCACATAATTCACGAAC	LOC_Os06g05060
OsAffx.27460.1.S1_at--823--791	1	Chr06:2233645..2233669 (25 bp)	GGTTGTTCCACATAATTCACGAACT	LOC_Os06g05060
OsAffx.27460.1.S1_at--141--665	1	Chr06:2233644..2233668 (25 bp)	GTTGTTCCACATAATTCACGAACTG	LOC_Os06g05060
OsAffx.27460.1.S1_at--953--1079	1	Chr06:2233643..2233667 (25 bp)	TTGTTCCACATAATTCACGAACTGC	LOC_Os06g05060
OsAffx.27460.1.S1_at--680--5	1	Chr06:2233562..2233586 (25 bp)	ATTGATAGCCATGAGAACTGGCAAT	LOC_Os06g05060
OsAffx.27460.1.S1_at--892--883	1	Chr06:2233560..2233584 (25 bp)	TGATAGCCATGAGAACTGGCAATTT	LOC_Os06g05060

Target Sequence

TATCAAGGTTGTTCCACATAATTCACGAACTGCTTCAGAGTCAGCAGCACGGATTTTCCGGTCAATACAAATGGAACGGC
AACGAGATGATTGATAGCCATGAGAACTGGCAATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis