Browse Element(s) Details

OsAffx.27499.3.S1_x_at

Description

tigr:9634.m00723
TID=OsAffx.27499.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Exostosin family, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07987	11/11	Exostosin family protein
LOC_Os06g07887	11/11	Exostosin family protein
LOC_Os01g45350	1/11	limonene cyclase like protein, putative, expressed
LOC_Os07g09050	1/11	exostosin family protein, putative, expressed
LOC_Os04g01930	1/11	exostosin family protein, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07914	OsAffx.22569.2.S1_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.2.S1_x_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.1.S1_x_at	7/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07923	Os.27542.1.A1_at	11/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	Os.20904.1.S1_at	8/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	OsAffx.19206.1.S1_x_at	2/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07932	Os.15663.1.S1_at	5/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07932	Os.10521.1.S1_at	2/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07941	Os.27693.1.S1_at	11/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07941	OsAffx.22569.1.S1_x_at	1/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07960	Os.3545.1.S1_at	11/11	6	+	3860286..3864403	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07969	Os.3546.1.S1_at	11/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07969	OsAffx.27501.1.S1_at	9/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07978	Os.4216.1.S1_a_at	11/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.2.S1_x_at	6/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.1.S1_at	1/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07987	OsAffx.27499.3.S1_x_at	11/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	OsAffx.13617.1.S1_x_at	2/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	Os.51833.1.S1_x_at	1/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07996	OsAffx.27499.2.S1_at	11/11	6	+	3874485..3877204	ribosomal protein S15 containing protein
LOC_Os06g08005	Os.4754.1.S1_at	11/11	6	+	3877872..3882078	galactosyltransferase family protein, putative, expressed
LOC_Os06g08014	OsAffx.22569.2.S1_x_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.2.S1_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.1.S1_x_at	7/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.27542.1.A1_at	11/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.20904.1.S1_at	8/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	OsAffx.19206.1.S1_x_at	2/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08032	Os.15663.1.S1_at	5/11	6	+	3892673..3894157	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08041	Os.27693.1.S1_at	11/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08041	OsAffx.22569.1.S1_x_at	1/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27499.3.S1_x_at--243--461	2	Chr06:3871720..3871744 (25 bp)	GCGAGGGCGGCAACCCGTACTACTG	LOC_Os06g07987
OsAffx.27499.3.S1_x_at--120--991	2	Chr06:3871703..3871727 (25 bp)	TACTACTGGTACATGCGGCGGAGCA	LOC_Os06g07987
OsAffx.27499.3.S1_x_at--8--989	3	Chr07:4731111..4731132 (22 bp)	TACATGCGGCGGAGCAGGTTCTGCC	LOC_Os07g09050
OsAffx.27499.3.S1_x_at--899--395	2	Chr06:3871685..3871709 (25 bp)	CGGAGCAGGTTCTGCCTGTGCCCGA	LOC_Os06g07987
OsAffx.27499.3.S1_x_at--846--807	2	Chr06:3871503..3871527 (25 bp)	GGAGCTGCTGGAGCGGATCCCGGCA	LOC_Os06g07987
OsAffx.27499.3.S1_x_at--1010--729	2	Chr06:3871451..3871475 (25 bp)	GTGCGGCTGGTGAAGCGCCATTTCA	LOC_Os06g07987
OsAffx.27499.3.S1_x_at--904--775	2	Chr06:3871443..3871467 (25 bp)	GGTGAAGCGCCATTTCATGCTGCAC	LOC_Os06g07987
OsAffx.27499.3.S1_x_at--53--963	2	Chr06:3871429..3871453 (25 bp)	TCATGCTGCACCAGCCGCCGGAGAG	LOC_Os06g07987
OsAffx.27499.3.S1_x_at--810--805	2	Chr06:3871410..3871434 (25 bp)	GGAGAGGCTCGACATGTTCCACATG	LOC_Os06g07987
OsAffx.27499.3.S1_x_at--594--73	3	Chr01:26074589..26074608 (20 bp)	ATGTTCCACATGATCCTGCACTCTG	LOC_Os01g45350
OsAffx.27499.3.S1_x_at--836--885	3	Chr04:578011..578035 (25 bp)	TGATCCTGCACTCTGTCTGGCTCAG	LOC_Os04g01930

Target Sequence

GCGAGGGCGGCAACCCGTACTACTGGTACATGCGGCGGAGCAGGTTCTGCCTGTGCCCGAGCGGGCACGAGGTGGCGAGC
CCGCGGGTGGTGGAGGCGATCCACGCCGGGTGCGTGCCGGTGGTAGTCGCCGACGGGTACGCGCCGCCGTTCGCCGACGT
GCTGCGGTGGGAGGCGTTCTCGGTGGCGGTGGCGGTCGCCGATGTGCCGAGGCTGAGGGAGCTGCTGGAGCGGATCCCGG
CACCGGAGGTGGAGCGCCTCCGCGACGGCGTGCGGCTGGTGAAGCGCCATTTCATGCTGCACCAGCCGCCGGAGAGGCTC
GACATGTTCCACATGATCCTGCACTCTGTCTGGCTCAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis