Browse Element(s) Details


OsAffx.27578.1.S1_at

Description tigr:9634.m01182
TID=OsAffx.27578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1205011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12020Os.51139.1.A1_at11/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12020OsAffx.14668.1.S1_at1/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12030Os.8940.1.S1_at11/116+6439429..6446607Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os06g12040Os.27584.1.S1_at11/116+6451850..6453455mTERF family protein, expressed
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27578.1.S1_at--1117--8351Chr06:6458069..6458093 (25 bp)
GGCGGATTCCGCATCAAGTCTCTTG
LOC_Os06g12050
OsAffx.27578.1.S1_at--472--2851Chr06:6458054..6458078 (25 bp)
AAGTCTCTTGGTTCAAAGCTCGCCT
LOC_Os06g12050
OsAffx.27578.1.S1_at--631--10511Chr06:6458043..6458067 (25 bp)
TTCAAAGCTCGCCTTCTTGGTCACA
LOC_Os06g12050
OsAffx.27578.1.S1_at--117--10551Chr06:6458010..6458054 (25 bp)
TTCTTGGTCACAGTGCCTGGAGGTT
LOC_Os06g12050
OsAffx.27578.1.S1_at--191--3191Chr06:6457967..6457991 (25 bp)
CAATTAAGCCGGGAACACGTCTATT
LOC_Os06g12050
OsAffx.27578.1.S1_at--396--8171Chr06:6457956..6457980 (25 bp)
GGAACACGTCTATTTGCTCTCGCAG
LOC_Os06g12050
OsAffx.27578.1.S1_at--950--10271Chr06:6457944..6457968 (25 bp)
TTTGCTCTCGCAGTTGTGAAGTTTG
LOC_Os06g12050
OsAffx.27578.1.S1_at--978--8991Chr06:6457928..6457952 (25 bp)
TGAAGTTTGCAATCCTCAGCCAGGG
LOC_Os06g12050
OsAffx.27578.1.S1_at--674--9791Chr06:6457876..6457900 (25 bp)
TAAGAAGCTTGGATGGTCACAGGAA
LOC_Os06g12050
OsAffx.27578.1.S1_at--45--8191Chr06:6457855..6457879 (25 bp)
GGAAGATTTGTCATTAGCAGCGAAG
LOC_Os06g12050
OsAffx.27578.1.S1_at--401--5491Chr06:6457831..6457855 (25 bp)
GAACATGCCAAGTATCCTTGCCATG
LOC_Os06g12050
Target Sequence 
GGCGGATTCCGCATCAAGTCTCTTGGTTCAAAGCTCGCCTTCTTGGTCACAGTGCCTGGAGGTTGTCAGGATGAACTGTG
GGCAATTAAGCCGGGAACACGTCTATTTGCTCTCGCAGTTGTGAAGTTTGCAATCCTCAGCCAGGGGAAGATCACCAAGA
AATCAGGGCTGTTTAAGAAGCTTGGATGGTCACAGGAAGATTTGTCATTAGCAGCGAAGAACATGCCAAGTATCCTTGCC
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis