Browse Element(s) Details

OsAffx.27632.1.S1_at

Description

tigr:9634.m01424
TID=OsAffx.27632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14270	11/11	hypothetical protein
LOC_Os12g14630	1/11	retrotransposon protein, putative, LINE subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14230	NA	NA	6	+	7936672..7936926	hypothetical protein
LOC_Os06g14240	Os.9950.1.S1_at	11/11	6	+	7939955..7940681	Hsp20/alpha crystallin family protein, expressed
LOC_Os06g14250	Os.35344.18.S1_x_at	10/11	6	+	7944053..7950099	transposon protein, putative, Mutator sub-class
LOC_Os06g14250	Os.35344.3.S1_x_at	9/11	6	+	7944053..7950099	transposon protein, putative, Mutator sub-class
LOC_Os06g14250	OsAffx.22940.5.S1_x_at	3/11	6	+	7944053..7950099	transposon protein, putative, Mutator sub-class
LOC_Os06g14260	Os.46882.1.S1_at	2/11	6	+	7952936..7955232	Protein kinase domain containing protein
LOC_Os06g14270	OsAffx.27632.1.S1_at	11/11	6	+	7959790..7960936	hypothetical protein
LOC_Os06g14280	OsAffx.27633.1.S1_at	11/11	6	+	7962962..7966745	33 kDa secretory protein, putative, expressed
LOC_Os06g14290	Os.35344.18.S1_x_at	10/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	Os.35344.3.S1_x_at	9/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	OsAffx.22940.5.S1_x_at	3/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14300	NA	NA	6	+	7978497..7980136	transposon protein, putative, unclassified
LOC_Os06g14310	OsAffx.15422.2.S1_at	11/11	6	+	7981085..7982860	cation channel family protein
LOC_Os06g14324	Os.10311.1.S1_a_at	11/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_s_at	10/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_x_at	9/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.24876.1.S1_s_at	5/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.14652.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.27197.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27632.1.S1_at--282--171	1	Chr06:7960754..7960778 (25 bp)	ACCAGGGCGATTGCAGTGGCGACCA	LOC_Os06g14270
OsAffx.27632.1.S1_at--12--755	1	Chr06:7960739..7960763 (25 bp)	GTGGCGACCAAGACGGAGCAACCCA	LOC_Os06g14270
OsAffx.27632.1.S1_at--1013--337	1	Chr06:7960244..7960452 (25 bp)	CAGCCGGATGGCTCGATGGGTTATC	LOC_Os06g14270
OsAffx.27632.1.S1_at--1098--767	1	Chr06:7960227..7960251 (25 bp)	GGGTTATCCCCTAAAGAGCTATCTC	LOC_Os06g14270
OsAffx.27632.1.S1_at--508--431	1	Chr06:7960203..7960227 (25 bp)	CCTTCACTCTACCAGATTGCAACAA	LOC_Os06g14270
OsAffx.27632.1.S1_at--361--97	1	Chr06:7960157..7960181 (25 bp)	AGGAGTTACAGGACAACCGCTGGTT	LOC_Os06g14270
OsAffx.27632.1.S1_at--1159--537	1	Chr06:7960121..7960145 (25 bp)	GAAGAATGAACACCACAGCCCAAGT	LOC_Os06g14270
OsAffx.27632.1.S1_at--143--137	1	Chr06:7960095..7960119 (25 bp)	AGAGAATTCATCCACCTATGGCACC	LOC_Os06g14270
OsAffx.27632.1.S1_at--782--85	2	Chr12:8354903..8354927 (25 bp)	ATGGCACCAAATCCAGCAGGTCGTT	LOC_Os12g14630
OsAffx.27632.1.S1_at--682--655	1	Chr06:7960030..7960054 (25 bp)	GATTATGTGGCGATGGTCCCCAAAC	LOC_Os06g14270
OsAffx.27632.1.S1_at--65--533	1	Chr06:7960004..7960028 (25 bp)	GAACCTACTCGGCAAAATCCGCTTA	LOC_Os06g14270

Target Sequence

ACCAGGGCGATTGCAGTGGCGACCAAGACGGAGCAACCCAGCCGGATGGCTCGATGGGTTATCCCCTAAAGAGCTATCTC
CTTCACTCTACCAGATTGCAACAAGAAAGAACAGAACGGTGGCGCAGGAGTTACAGGACAACCGCTGGTTGAGACAGATG
CGAAGAATGAACACCACAGCCCAAGTCAGAGAATTCATCCACCTATGGCACCAAATCCAGCAGGTCGTTCTGCAAGAAGG
AACGGAGGACACGATTATGTGGCGATGGTCCCCAAACGGAACCTACTCGGCAAAATCCGCTTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis