Browse Element(s) Details


OsAffx.28163.1.S1_at

Description tigr:9634.m04678
TID=OsAffx.28163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4796011/11RNase H domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47890OsAffx.15976.1.S1_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47890Os.4661.1.S1_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47890OsAffx.15976.1.S1_x_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47900Os.49737.1.S1_at11/116+28976494..28979782expressed protein
LOC_Os06g47900Os.51829.1.S1_x_at11/116+28976494..28979782expressed protein
LOC_Os06g47910Os.54869.1.S1_at11/116+28980369..28982438GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g47920OsAffx.28162.1.S1_at11/116+28984905..28986851pentatricopeptide, putative
LOC_Os06g47930Os.50234.1.S1_at11/116+28987079..28989337expressed protein
LOC_Os06g47940Os.32506.1.S1_at11/116+28992798..28994024nitrogen fixation protein, putative, expressed
LOC_Os06g47950OsAffx.15977.1.S1_s_at11/116+28994482..28996359pentatricopeptide, putative, expressed
LOC_Os06g47960OsAffx.28163.1.S1_at11/116+28997830..28998483RNase H domain-containing protein, putative
LOC_Os06g47970Os.11917.1.S1_at11/116+29001191..29002543expressed protein
LOC_Os06g47980OsAffx.5142.1.S1_at11/116+29010063..29010587hypothetical protein
LOC_Os06g47980OsAffx.5142.1.S1_x_at11/116+29010063..29010587hypothetical protein
LOC_Os06g47990Os.35344.18.S1_x_at9/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g47990Os.35344.3.S1_x_at9/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g47990OsAffx.22940.5.S1_x_at3/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g48000OsAffx.15978.1.S1_x_at11/116+29020795..29022244Peroxidase 16 precursor, putative
LOC_Os06g48000OsAffx.15978.1.S1_at11/116+29020795..29022244Peroxidase 16 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28163.1.S1_at--91--8351Chr06:28997910..28997934 (25 bp)
GGCGGCTGGACACAGTTTCTCCCCA
LOC_Os06g47960
OsAffx.28163.1.S1_at--977--5231Chr06:28997942..28997966 (25 bp)
GAATCACATTGGTTCGCTGGACGCC
LOC_Os06g47960
OsAffx.28163.1.S1_at--60--3811Chr06:28997969..28997993 (25 bp)
CTCGCCACGGTTGGGTCAAGCTCAA
LOC_Os06g47960
OsAffx.28163.1.S1_at--8--3951Chr06:28997976..28998000 (25 bp)
CGGTTGGGTCAAGCTCAACTTCGAC
LOC_Os06g47960
OsAffx.28163.1.S1_at--937--2511Chr06:28997992..28998016 (25 bp)
AACTTCGACGGCTCAGTCCACAACG
LOC_Os06g47960
OsAffx.28163.1.S1_at--98--9051Chr06:28998146..28998170 (25 bp)
TGCAGCTGGCGCTCGACCACGGCTG
LOC_Os06g47960
OsAffx.28163.1.S1_at--805--1931Chr06:28998164..28998188 (25 bp)
ACGGCTGGAACGACCGGCTGCTTGT
LOC_Os06g47960
OsAffx.28163.1.S1_at--738--8591Chr06:28998209..28998233 (25 bp)
TGGTCCGGCTGCTCCGATGCGAGTC
LOC_Os06g47960
OsAffx.28163.1.S1_at--872--3991Chr06:28998297..28998321 (25 bp)
CGTGTGCGAGGTGCAGCACGCCTAC
LOC_Os06g47960
OsAffx.28163.1.S1_at--909--4131Chr06:28998347..28998371 (25 bp)
CGCTGTGCCACGAGGCGTACAAGGC
LOC_Os06g47960
OsAffx.28163.1.S1_at--1001--9291Chr06:28998413..28998437 (25 bp)
TCCCGTTCCCCGTCTGGGAGAAGCT
LOC_Os06g47960
Target Sequence 
GGCGGCTGGACACAGTTTCTCCCCACCCACACGAATCACATTGGTTCGCTGGACGCCGCCTCGCCACGGTTGGGTCAAGC
TCAACTTCGACGGCTCAGTCCACAACGACGGCTCCGGCAGGGCCAGCATCGGCGGGGTCATCCGCGACGACCACGGCCGC
GTCCTCCTCGCCTTCGCCGAGCGGACGCCGCACGCCACGATCGGGGTGGTGGAGGCGCGAGCGCTCATCCGCGGCCTGCA
GCTGGCGCTCGACCACGGCTGGAACGACCGGCTGCTTGTGGAAGGGGACGACCTGACCCTGGTCCGGCTGCTCCGATGCG
AGTCCACCCACACCCGCATCCCGCCGGCGATGCTCGACGACATCCTCTGGCTGCTCGACTCCTTCCGCGTGTGCGAGGTG
CAGCACGCCTACCGCGAGGGGAACCAGGTGGCCGACGCGCTGTGCCACGAGGCGTACAAGGCGGCGCCGGCGGCGAGGCT
CTGGACGCCCGGCACGGCCATGGTCCCGTTCCCCGTCTGGGAGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis