Browse Element(s) Details

OsAffx.28187.1.S1_at

Description

tigr:9634.m04811
TID=OsAffx.28187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49390	11/11	NB-ARC domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49350	NA	NA	6	+	29896282..29903445	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49360	Os.49229.1.S1_at	8/11	6	+	29904062..29906316	NB-ARC domain containing protein, expressed
LOC_Os06g49360	Os.53902.1.S1_x_at	1/11	6	+	29904062..29906316	NB-ARC domain containing protein, expressed
LOC_Os06g49370	Os.38172.1.S1_x_at	2/11	6	+	29910417..29912080	transposon protein, putative, unclassified
LOC_Os06g49370	Os.43567.1.S1_x_at	2/11	6	+	29910417..29912080	transposon protein, putative, unclassified
LOC_Os06g49380	Os.53902.1.S1_x_at	11/11	6	+	29918223..29923542	NB-ARC domain containing protein, expressed
LOC_Os06g49380	OsAffx.15995.1.S1_at	11/11	6	+	29918223..29923542	NB-ARC domain containing protein, expressed
LOC_Os06g49390	OsAffx.28187.1.S1_s_at	11/11	6	+	29925783..29930823	NB-ARC domain containing protein, expressed
LOC_Os06g49390	OsAffx.28187.1.S1_at	11/11	6	+	29925783..29930823	NB-ARC domain containing protein, expressed
LOC_Os06g49390	Os.53902.1.S1_x_at	1/11	6	+	29925783..29930823	NB-ARC domain containing protein, expressed
LOC_Os06g49399	OsAffx.2793.1.S1_at	1/11	6	+	29933384..29934106	NA
LOC_Os06g49410	OsAffx.28188.1.S1_at	11/11	6	+	29937346..29937934	hypothetical protein
LOC_Os06g49410	OsAffx.30123.1.S1_at	3/11	6	+	29937346..29937934	hypothetical protein
LOC_Os06g49420	OsAffx.15996.1.S1_x_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49420	Os.53727.1.S2_x_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49420	Os.53727.1.S1_x_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49420	Os.57318.1.S1_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49430	Os.7913.1.S1_a_at	11/11	6	+	29948900..29953876	Protein kinase domain containing protein, expressed
LOC_Os06g49440	Os.24609.1.A1_s_at	11/11	6	+	29954725..29959779	Carboxylesterase, putative, expressed
LOC_Os06g49440	Os.52405.1.S1_at	1/11	6	+	29954725..29959779	Carboxylesterase, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28187.1.S1_at--104--677	1	Chr06:29926472..29926496 (25 bp)	GTTACTCGAAGCTGCGATTCCTCCC	LOC_Os06g49390
OsAffx.28187.1.S1_at--65--541	1	Chr06:29926465..29926489 (25 bp)	GAAGCTGCGATTCCTCCCAACAGGG	LOC_Os06g49390
OsAffx.28187.1.S1_at--69--913	1	Chr06:29926460..29926484 (25 bp)	TGCGATTCCTCCCAACAGGGCTACA	LOC_Os06g49390
OsAffx.28187.1.S1_at--165--9	1	Chr06:29926456..29926480 (25 bp)	ATTCCTCCCAACAGGGCTACACAGG	LOC_Os06g49390
OsAffx.28187.1.S1_at--842--929	1	Chr06:29926451..29926475 (25 bp)	TCCCAACAGGGCTACACAGGCTCAC	LOC_Os06g49390
OsAffx.28187.1.S1_at--759--91	1	Chr06:29926434..29926458 (25 bp)	AGGCTCACCCGCCTCAAGAGATTAG	LOC_Os06g49390
OsAffx.28187.1.S1_at--771--867	1	Chr06:29926400..29926424 (25 bp)	TGTGTCCAGCCATCCGTTTGCTGCC	LOC_Os06g49390
OsAffx.28187.1.S1_at--46--339	1	Chr06:29926394..29926418 (25 bp)	CAGCCATCCGTTTGCTGCCCAAGGG	LOC_Os06g49390
OsAffx.28187.1.S1_at--269--441	1	Chr06:29926392..29926416 (25 bp)	GCCATCCGTTTGCTGCCCAAGGGCG	LOC_Os06g49390
OsAffx.28187.1.S1_at--170--917	1	Chr06:29926379..29926403 (25 bp)	TGCCCAAGGGCGGTCTTCCGAGATC	LOC_Os06g49390
OsAffx.28187.1.S1_at--913--415	1	Chr06:29926377..29926401 (25 bp)	CCCAAGGGCGGTCTTCCGAGATCAC	LOC_Os06g49390

Target Sequence

GTTACTCGAAGCTGCGATTCCTCCCAACAGGGCTACACAGGCTCACCCGCCTCAAGAGATTAGAGATCGCCTTGTGTCCA
GCCATCCGTTTGCTGCCCAAGGGCGGTCTTCCGAGATCAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis