Browse Element(s) Details


OsAffx.28326.1.S1_at

Description tigr:9635.m00698
TID=OsAffx.28326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0751011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07530Os.54674.1.S1_at11/117+3752692..3756154expressed protein
LOC_Os07g07530Os.29072.1.S1_at3/117+3752692..3756154expressed protein
LOC_Os07g07540Os.2422.1.S1_a_at11/117+3758223..3760268SHOOT1 protein, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_x_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28326.1.S1_at--845--9291Chr07:3736050..3736074 (25 bp)
TCCGCGTAGATCTCGCCGACGTCAA
LOC_Os07g07510
OsAffx.28326.1.S1_at--335--4291Chr07:3736004..3736028 (25 bp)
CCTCGTCGACGTGGCTCTTGTAGCG
LOC_Os07g07510
OsAffx.28326.1.S1_at--404--6911Chr07:3735985..3736009 (25 bp)
GTAGCGGCCGAACTTGACCGTCGTA
LOC_Os07g07510
OsAffx.28326.1.S1_at--188--8391Chr07:3735980..3736004 (25 bp)
GGCCGAACTTGACCGTCGTAACGCA
LOC_Os07g07510
OsAffx.28326.1.S1_at--562--5411Chr07:3735976..3736000 (25 bp)
GAACTTGACCGTCGTAACGCAGACA
LOC_Os07g07510
OsAffx.28326.1.S1_at--681--8911Chr07:3735971..3735995 (25 bp)
TGACCGTCGTAACGCAGACACCCGT
LOC_Os07g07510
OsAffx.28326.1.S1_at--329--3951Chr07:3735964..3735988 (25 bp)
CGTAACGCAGACACCCGTGGCGGAG
LOC_Os07g07510
OsAffx.28326.1.S1_at--307--5451Chr07:3735911..3735935 (25 bp)
GAACCCGTCCGTCCTGGATGGTCAC
LOC_Os07g07510
OsAffx.28326.1.S1_at--1130--7231Chr07:3735905..3735929 (25 bp)
GTCCGTCCTGGATGGTCACCTCGTT
LOC_Os07g07510
OsAffx.28326.1.S1_at--125--6251Chr07:3735895..3735919 (25 bp)
GATGGTCACCTCGTTCTCGATGGAG
LOC_Os07g07510
OsAffx.28326.1.S1_at--329--7111Chr07:3735891..3735915 (25 bp)
GTCACCTCGTTCTCGATGGAGGAGA
LOC_Os07g07510
Target Sequence 
TCCGCGTAGATCTCGCCGACGTCAACAGCGGCGGCGCGACCGTCTTCCTCGTCGACGTGGCTCTTGTAGCGGCCGAACTT
GACCGTCGTAACGCAGACACCCGTGGCGGAGCTCCTGCACGGCCACCGATGCACTGCGCGAACCCGTCCGTCCTGGATGG
TCACCTCGTTCTCGATGGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis