Browse Element(s) Details


OsAffx.28338.3.A1_x_at

Description tigr:9633.m04270
TID=OsAffx.28338.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4556011/11hypothetical protein
LOC_Os03g299907/11hypothetical protein
LOC_Os07g381902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein
LOC_Os05g45500OsAffx.15113.1.S1_at11/115+26301531..26302452expressed protein
LOC_Os05g45510Os.57131.1.S1_at11/115+26302594..26304437expressed protein
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g45560OsAffx.28338.3.A1_x_at11/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.17065.1.A1_s_at2/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.5300.2.S1_at1/115+26323008..26323946hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_x_at11/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_at9/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.2.S1_x_at6/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53071.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53709.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45580OsAffx.27326.1.S1_at11/115+26330823..26334020expressed protein
LOC_Os05g45580OsAffx.6484.1.A1_at1/115+26330823..26334020expressed protein
LOC_Os05g45590OsAffx.27327.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45590Os.17535.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45600Os.40855.2.S1_x_at9/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_x_at3/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_at1/115+26346700..26350370hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28338.3.A1_x_at--974--8251Chr05:26323039..26323063 (25 bp)
GGCAGCGCGGCGGTAGGGCTCTGCG
LOC_Os05g45560
OsAffx.28338.3.A1_x_at--1061--3951Chr05:26323049..26323073 (25 bp)
CGGTAGGGCTCTGCGCGGCTCCGTT
LOC_Os05g45560
OsAffx.28338.3.A1_x_at--1133--3932Chr07:22908018..22908042 (25 bp)
CGGCTCCGTTGAGGGCGTCGCCAGA
LOC_Os07g38190
OsAffx.28338.3.A1_x_at--817--4413Chr07:22908037..22908061 (25 bp)
GCCAGATCTGGTAGCCCCGCCAGAT
LOC_Os07g38190
OsAffx.28338.3.A1_x_at--693--5453Chr05:26323873..26323897 (25 bp)
GAACGGGCGTTGACAGCATCCTTGA
LOC_Os05g45560
OsAffx.28338.3.A1_x_at--944--2574Chr05:26323874..26323898 (25 bp)
AACGGGCGTTGACAGCATCCTTGAT
LOC_Os05g45560
OsAffx.28338.3.A1_x_at--578--1914Chr05:26323875..26323899 (25 bp)
ACGGGCGTTGACAGCATCCTTGATG
LOC_Os05g45560
OsAffx.28338.3.A1_x_at--486--3995Chr07:22914468..22914545 (25 bp)
CGGGCGTTGACAGCATCCTTGATGT
NONE
OsAffx.28338.3.A1_x_at--564--7575Chr11:125756..125775 (20 bp)
GGGCGTTGACAGCATCCTTGATGTT
NONE
OsAffx.28338.3.A1_x_at--990--4635Chr05:26323879..26323903 (25 bp)
GCGTTGACAGCATCCTTGATGTTGT
LOC_Os05g45560
OsAffx.28338.3.A1_x_at--279--572Chr05:26323890..26323914 (25 bp)
ATCCTTGATGTTGTTTCCTTGTTGA
LOC_Os05g45560
Target Sequence 
GGCAGCGCGGCGGTAGGGCTCTGCGCGGCTCCGTTGAGGGCGTCGCCAGATCTGGTAGCCCCGCCAGATCTGGCCGGGGT
GAAAACCGGGTTCCTTTCGGAACGGGCGTTGACAGCATCCTTGATGTTGTTTCCTTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28338.3.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis